1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttctttgctaataaatactacacttgtgttacttgtacataaaatggctggcatacatctgcagttcctttgttcttaatttcttttgctcctacattctggttctgggtaaacttatataacgtaatctgaaaatgccctatttgtttctcaaatttttcag
species | Zea mays |
transcript | GRMZM2G013625_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAG GAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAGEST: gi|71426234|gb|DR807284.1|DR807284
genomic: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
EST: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAG GAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAGEST: gi|71328261|gb|DR800761.1|DR800761
genomic: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
EST: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAG GAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAGEST: gi|32795556|gb|CD947792.1|CD947792
genomic: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
EST: GATCCCACCAG GAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAGEST: gi|32795393|gb|CD947629.1|CD947629
genomic: GATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
EST: GATCCAACCAG GAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAGEST: gi|76014394|gb|DT941564.1|DT941564
genomic: GATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
EST: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAG GAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAGEST: gi|18168836|gb|BM338676.1|BM338676
genomic: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
EST: GGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAG GAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAGEST: gi|78115431|gb|DV533819.1|DV533819
genomic: GGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
EST: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAG GAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAGEST: gi|71767635|gb|DR965572.1|DR965572
genomic: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
EST: TGTTACCAGAGGCTGTTGTCA-TTGTGGTCGCACCCACAGATCCAACCAG GAGTTACGGAATATTCAGGCTGACTGAAEST: gi|37375435|gb|CF624155.1|CF624155
genomic: TGTTACCAGAGGCTGTTG-CAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAA
EST: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAG GAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
genomic: ATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttc ... aatttttcagGAGTTACGGAATATTCAGGCTGACTGAACCTGGAGGGATGGATGTTCTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttctttgctaataaatactacacttgtgttacttgtacataaaatggctggcatacatctgcagttcctttgttcttaatttcttttgctcctacattctggttctgggtaaacttatataacgtaatctgaaaatgccctatttgtttctcaaatttttcag
- - - - - - - GCTGTT