1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TTACCCTTTTCATGTCTGACATAGCAGATGAATTCAAGATAGTTGTTGTTGAAGCTATACGGTCTTTGTGCCTGAAGTTCCCACTAAAATATCGCTCAATgtatgtgaacaactgaaagagtgttgattctttgccttcaattctactgctttgactatgtcttctgtctttcag
species | Zea mays |
transcript | GRMZM2G012501_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCCTGAATTTTCCACTAAAATATCGCTCAAT GTTGCATTTTTTGAGCAACAGCTTGAGGGAAGAAGGGGGCTTTGAGTATAAEST: gi|32942885|gb|CF047704.1|CF047704
genomic: GCCTGAAGTTCCCACTAAAATATCGCTCAATgtatgtgaac ... tgtctttcagGTTGAATTTTTTGAGCAACAGCTTGAGGGAAGAAGGGGGCTTTGAGTATAA
EST: GAAGCTATACGGTCTTTGTGCCTGAAGTTCCCACTAAAATATCGCTCAAT GTTGAATTTTTTGAGCAACAGCTTGAGGGAAGAAGGGGGCTTTGAGTATAAEST: gi|67030306|gb|CO459055.1|CO459055
genomic: GAAGCTATACGGTCTTTGTGCCTGAAGTTCCCACTAAAATATCGCTCAATgtatgtgaac ... tgtctttcagGTTGAATTTTTTGAGCAACAGCTTGAGGGAAGAAGGGGGCTTTGAGTATAA
EST: GAAGCTATACGGTCTTTGTGCCTGAAGTTCCCACTAAAATATCGCTCAAT GTTGAATTTTTTGAGCAACAGCTTGAGGGAAGAAGGGGGCTTTGAGTATAAEST: gi|32945171|gb|CF049990.1|CF049990
genomic: GAAGCTATACGGTCTTTGTGCCTGAAGTTCCCACTAAAATATCGCTCAATgtatgtgaac ... tgtctttcagGTTGAATTTTTTGAGCAACAGCTTGAGGGAAGAAGGGGGCTTTGAGTATAA
EST: GAAGCTATACGGTCTTTGTGCCTGAAGTTCCCACTAAAATATCGCTCAAT GTTGAATTTTTTGAGCAACAGCTTGAGGGAAGAAGGGGGCTTTGAGTATAA
genomic: GAAGCTATACGGTCTTTGTGCCTGAAGTTCCCACTAAAATATCGCTCAATgtatgtgaac ... tgtctttcagGTTGAATTTTTTGAGCAACAGCTTGAGGGAAGAAGGGGGCTTTGAGTATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACCCTTTTCATGTCTGACATAGCAGATGAATTCAAGATAGTTGTTGTTGAAGCTATACGGTCTTTGTGCCTGAAGTTCCCACTAAAATATCGCTCAATgtatgtgaacaactgaaagagtgttgattctttgccttcaattctactgctttgactatgtcttctgtctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG