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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTGAATTGTATGACTTCGATGATGAGAAGgtagtcattcaaacattcaattcatgtgctttgatgagttattttttttgaagtgtcttgctcatcaccaatttaattctcctccatgattgcttgaag

Basic information

species Zea mays
transcript GRMZM2G010085_T02
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87155727|gb|DY400516.1|DY400516
EST:     ATGCTGAATTGTATGACTTCGATGATGAGAAG                         GATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
genomic: ATGCTGAATTGTATGACTTCGATGATGAGAAGgtagtcattc ... ttgcttgaagGATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
EST: gi|32930781|gb|CF035593.1|CF035593
EST:     ATGCTGAATTGTATGACTTCGATGATGAGAAG                         GATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
genomic: ATGCTGAATTGTATGACTTCGATGATGAGAAGgtagtcattc ... ttgcttgaagGATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
EST: gi|31351381|gb|CD435738.1|CD435738
EST:     ATGCTGAATTGTATGACTTCGATGATGAGAAG                         GATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
genomic: ATGCTGAATTGTATGACTTCGATGATGAGAAGgtagtcattc ... ttgcttgaagGATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
EST: gi|6194488|gb|AW146592.1|AW146592
EST:     ATGCTGAATTGTATGACTTCGATGATGAGAAG                         GATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
genomic: ATGCTGAATTGTATGACTTCGATGATGAGAAGgtagtcattc ... ttgcttgaagGATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
EST: gi|32930784|gb|CF035596.1|CF035596
EST:     ATGCTGAATTGTATGACTTCGATGATGAGAAG                         GATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
genomic: ATGCTGAATTGTATGACTTCGATGATGAGAAGgtagtcattc ... ttgcttgaagGATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
EST: gi|6194533|gb|AW146637.1|AW146637
EST:     GGATGATAATGCTGAATTGTATGACTTCGATGATGAGAAG                         GATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
genomic: GGATGATAATGCTGAATTGTATGACTTCGATGATGAGAAGgtagtcattc ... ttgcttgaagGATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
EST: gi|22546162|gb|BU098473.1|BU098473
EST:     ATGCTGAATTGTATGACTTCGATGATGAGAAG                         GATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG
genomic: ATGCTGAATTGTATGACTTCGATGATGAGAAGgtagtcattc ... ttgcttgaagGATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAG