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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttactagtttagcttggtaacttttgcag

Basic information

species Zea mays
transcript GRMZM2G008611_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008611_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 5'ss of exon 6
GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactgcctggctct---catctctcctccatttacttgtcattgt--------tgacattttagcagagtggcttgctacttgt-gcagtacatgacatgtctatttactagtttagcttggtaacttttgcag
| |||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||| |||||| |||| |   | | |||||||||||   | |  |  |||     | | |  |   |  | || ||| | |         ||||||||| | ||  ||  |  |||  || |    | || |    | |  || ||     |  |   |   |||| |||
GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccag

upper sequence: GRMZM2G008611_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 5'ss of exon 6
GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttactagtttagcttggtaacttttgcag
||||||  |||||||||||||| |||||| |||| || || || ||||||||  ||||||||| |||||||| |||  |||  || |||||||| | |  ||     |||  |   |   ||| ||| |     ||||  || |    || |  ||| |  |||||| |      |||   | |  |   |  | | |  |              
GTCATTACAATATTTTTGTTGGTGATCTTAGCCCTGAGGTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTCgtaagctccgtttg-----catggcctttttgttttcttct-----ttgaatttgtgattgattaactttc--cttgtgtatgttgagactaatttgatccgtgttctggtatcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161580653|gb|EY956343.1|EY956343
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAAGAAAACAGGACGATCCA
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCA-GAAAACAGGACGATCCA
EST: gi|32927422|gb|CF032234.1|CF032234
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGTTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|32940921|gb|CF045740.1|CF045740
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGCTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|32927656|gb|CF032468.1|CF032468
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|32927013|gb|CF031825.1|CF031825
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|32850873|gb|CD990554.1|CD990554
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|6270004|gb|AW157975.1|AW157975
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC                         AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACG
EST: gi|32927394|gb|CF032206.1|CF032206
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|32928054|gb|CF032866.1|CF032866
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|32928740|gb|CF033552.1|CF033552
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|33092403|gb|CF052397.1|CF052397
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGCGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|32846545|gb|CD986226.1|CD986226
EST:     GTCACTGATGCTACTTTGTTCGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGCTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|166597480|gb|EG133910.1|EG133910
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGACTAGTGTTATGTGGGACCAGAAAACAGGACG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATG-CTAGTGTTATGTGGGACCAGAAAACAGGACG
EST: gi|166658931|gb|EG233793.1|EG233793
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACG
EST: gi|32928010|gb|CF032822.1|CF032822
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
EST: gi|32850928|gb|CD990609.1|CD990609
EST:     GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTC                         AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG
genomic: GTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGTTACTCTACTTGCTCgtaagcactg ... acttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGG