1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCTATTGAAGGTTGATTGATTTATCTGTTGGCTTCGACAGCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtctaaacttgtgtagctctgtttttctatccagaaattgtcaatctgcagatctgtttttgtttttgacttgataacgctgacttgataactcctaacag
species | Zea mays |
transcript | GRMZM2G006468_T05 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|16379972|gb|BI993236.1|BI993236
genomic: CGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGATCTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|13382144|gb|BG458819.1|BG458819
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|13178340|gb|BG349598.1|BG349598
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
genomic: AAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTATTGAAGGTTGATTGATTTATCTGTTGGCTTCGACAGCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtctaaacttgtgtagctctgtttttctatccagaaattgtcaatctgcagatctgtttttgtttttgacttgataacgctgacttgataactcctaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC