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ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctgttgatgttcttgccacatgctaaatcttctattactctgatttttattattcatattgaaggttttagtgcatgcttatttgtgggagca...
species | Zea mays |
transcript | GRMZM2G006468_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|33100633|gb|CF060593.1|CF060593
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGGCCAEST: gi|14244855|gb|BG842793.2|BG842793
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTCCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|14243138|gb|BG840841.2|BG840841
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|28984501|gb|BQ539125.2|BQ539125
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|78113266|gb|DV531659.1|DV531659
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTANCA-GTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCEST: gi|13562234|gb|BG550454.1|BG550454
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTA-CAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACC
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTGCAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|5895762|gb|AW037008.1|AW037008
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTEST: gi|211186706|gb|FL252851.1|FL252851
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTT
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|13178078|gb|BG349336.1|BG349336
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|16925921|gb|BM078989.1|BM078989
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|13177698|gb|BG349129.1|BG349129
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|60355084|gb|DN222057.1|DN222057
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|33102029|gb|CF061989.1|CF061989
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGGCCAEST: gi|60358728|gb|DN225701.1|DN225701
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|74242180|gb|DT650094.1|DT650094
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|211505179|gb|FL436188.1|FL436188
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|211507463|gb|FL431647.1|FL431647
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CGATCTTCGGCCTTTCAGATGCCATAAACATTGCTGTTTGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|60353604|gb|DN220577.1|DN220577
genomic: CGATCTTCGGCC-TTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|71774336|gb|DR972214.1|DR972214
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|76010925|gb|DT938095.1|DT938095
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|89755425|gb|DY685846.1|DY685846
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|33100890|gb|CF060850.1|CF060850
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTACTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|13178561|gb|BG349819.1|BG349819
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|16377885|gb|BI992166.1|BI992166
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: TGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|60346391|gb|DN213364.1|DN213364
genomic: TGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCAEST: gi|13249994|gb|BG360897.1|BG360897
genomic: CCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
EST: ATTGCTGTTCGTTGCAAG GTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
genomic: ATTGCTGTTCGTTGCAAGgtatttgctg ... gcatgaacagGTTCCTGTACAAGTCCATAGAAGTCTTGCATACAGTGACGGCATCAGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAGgtatttgctgttgatgttcttgccacatgctaaatcttctattactctgatttttattattcatattgaaggttttagtgcatgcttatttgtgggagca
- - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT