Sequence
atgc intronic sequence ATGC exonic sequenceTGCACCGAGGAAGCTCATCGTCCAGTAGACTGTGCCACTGTTTCGAAGTGGATCCTCAAGAACAGTGCGGAGTCGGAGAATATGAACTGgtatagaaggataaagcacaagttttttaatagtgccgactgtttggagtttctactttggattagtcttagaaacactaaggtagtgtttggttatgga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G006428_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g41470.1 (Oryza sativa), 5'ss of exon 7
TGCACCGAGGAAGCTCATCGTCCAGTAGACTGTGCCACTGTTTCGAAGTGGATCCTCAAGAACAGTGCGGAGTCGGAGAATATGAACTGgtataga-aggataaagca--caagttttttaatagtgccgactgtttggagtttctactttggattagtcttagaaacactaaggtagtgtttggttatgga
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TGCACTGAGGAAGCTCATCGTCCGGTAGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGTGCGGAGTCTGAAAATATGAACTGgtattgtcagaataacacagctttctttttcattactactgacatttttcttattgtaagttttgttcctttaattgcatttgatctttcttctgaaaac---
upper sequence: GRMZM2G006428_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT1G65430.1 (Arabidopsis thaliana), 5'ss of exon 7
TGCACCGAGGAAGCTCATCGTCCAGTAGACTGTGCCACTGTTTCGAAGTGGATCCTCAAGAACAGTGCGGAGTCGGAGAATATGAACTGgtatagaaggataaagcacaagttttttaatagtgccgactgtttggagtttctactttggattagtcttagaaacactaaggtagt--gtttggttatgga----
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TGTGCTGAAGAAGCTCACCGTCCTGTAGATTGTGACACTGTTTCTAAGTGGGTATTGAAGAATAGTGCTGAGTCGGAGAATATGAATTGgtacgtt--gatttatgagatatcgttgagatatgttg-ttgttgtg---ctcgaccttaaagggtgcttagattttttaaaatatttgggttctttataaataga
upper sequence: GRMZM2G006428_T02 (Zea mays), 5'ss of exon 7
lower sequence: EFJ08409 (Selaginella moellendorffii), 5'ss of exon 7
TGCACCGAGGAAGCTCATCGTCCAGTAGACTGTGCCACTGTTTCGAAGTGGATCCTCAAGAACAGTGCGGAGTCGGAGAATATGAACTGgtatagaaggataaagcacaagttttttaatagtgccgactgtttggagtttctactttggattagtcttagaaacactaaggtagtgtttggttatgga
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TGCTTAGAGGAAGCGCACCGACCGGTAGATTGTGAGACTGTTGCAAAGTGGATCCTCAAGAACAGCGCGGAGTCGGAAAACATGAACTGgtactatat---------ccagcctttgtatcaagtc-attgtcacgtacgtttgttgtcag--------------------------------------
upper sequence: GRMZM2G006428_T02 (Zea mays), 5'ss of exon 7
lower sequence: EFJ15174 (Selaginella moellendorffii), 5'ss of exon 7
TGCACCGAGGAAGCTCATCGTCCAGTAGACTGTGCCACTGTTTCGAAGTGGATCCTCAAGAACAGTGCGGAGTCGGAGAATATGAACTGgtatagaaggataaagcacaagttttttaatagtgccgactgtttggagtttctactttggattagtcttagaaacactaaggtagtgtttggttatgga
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TGCTTAGAGGAAGCGCACCGACCGGTAGATTGTGAGACTGTTGCAAAGTGGATCCTCAAGAACAGCGCGGAGTCAGAAAACATGAACTGgtactat---atccagcctttgtatcaagtcattgtca--cgtacgtagctgttgtcag-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76281609|gb|DV021177.1|DV021177EST: GTTTCGAAGTGGATCCTCAAGAACAGTGCGGAGTCGGAGAATATGAACTG GATACTGGCTAATTCAAAGCCTTGTCCCAAATGCAAGCGGCCTATTGNNNN
genomic: GTTTCGAAGTGGATCCTCAAGAACAGTGCGGAGTCGGAGAATATGAACTGgtatagaagg ... atggtttcagGATACTGGCTAATTCAAAGCCTTGTCCCAAATGCAAGCGGCCTATTGAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCACCGAGGAAGCTCATCGTCCAGTAGACTGTGCCACTGTTTCGAAGTGGATCCTCAAGAACAGTGCGGAGTCGGAGAATATGAACTGgtatagaaggataaagcacaagttttttaatagtgccgactgtttggagtttctactttggattagtcttagaaacactaaggtagtgtttggttatgga
- - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggataa