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GAAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAGgttagggtaaccttaaactgttggcacttagctccgcaccaccttcttgcattaccctgtttgctcatattttttctttcatttaaattatgtttag
species | Zea mays |
transcript | GRMZM2G005493_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AA-CAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAG GGTGAGNAT-AATATAAAGCCCATTGTGGGGTACTGCACAGCTCTTTATGCEST: gi|67027757|gb|CO456506.1|CO456506
genomic: AAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAGgttagggtaa ... ttatgtttagGGTGAG-ACCAATATAAAGCC-ATTGTGGGGTACTGCACAGCTCTTTATGC
EST: AAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAG GGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCATEST: gi|67019408|gb|CO448157.1|CO448157
genomic: AAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAGgttagggtaa ... ttatgtttagGGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCAT
EST: AAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAG GGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCATEST: gi|148950087|gb|EC895623.2|EC895623
genomic: AAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAGgttagggtaa ... ttatgtttagGGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCAT
EST: AAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAG GGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCATEST: gi|76286923|gb|DV026491.1|DV026491
genomic: AAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAGgttagggtaa ... ttatgtttagGGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCAT
EST: AAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAG GGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCATEST: gi|67010832|gb|CO439581.1|CO439581
genomic: AAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAGgttagggtaa ... ttatgtttagGGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCAT
EST: CAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAATCAGCTCCAG GGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCAT
genomic: CAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAGgttagggtaa ... ttatgtttagGGTGAGACCAATATAAAGCCATTGTGGGGTACTGCACAGCTCTTTATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACAAATGCTAACTTGGATGAGATAGTTGAGCTGGCAAAGCAGCTCCAGgttagggtaaccttaaactgttggcacttagctccgcaccaccttcttgcattaccctgtttgctcatattttttctttcatttaaattatgtttag
- - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - CAGCTC