1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATTTGGGAAATTCTCACAATCCGATTAAAGCTCCAAATTCGAATGCCAATTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAGgttagccacatctgatgctctatgtatgtctattctgtgtatgccctcccttatcatatacaggctgtgctatgaaaatgcataaggaccataacccatcatgtgatcagctaatccgcttcagttttttttatagctgatactgcattgtgttttaaaacccataacctaaaattatggtgttacag
species | Zea mays |
transcript | GRMZM2G005459_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAG GTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTGEST: gi|60394696|gb|DN227566.1|DN227566
genomic: TTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAGgttagccaca ... ggtgttacagGTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTG
EST: TTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAG GTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTGEST: gi|83278898|gb|DV942906.1|DV942906
genomic: TTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAGgttagccaca ... ggtgttacagGTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTG
EST: TTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAG GTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTGEST: gi|76011818|gb|DT938988.1|DT938988
genomic: TTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAGgttagccaca ... ggtgttacagGTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTG
EST: TTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAG GTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTGEST: gi|149074525|gb|EE162923.2|EE162923
genomic: TTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAGgttagccaca ... ggtgttacagGTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTG
EST: TCCCAGCAGCAATGCTGGTGGGCAGGTTGAAG GTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTG
genomic: TCCCAGCAGCAATGCTGGTGGGCAGGTTGAAGgttagccaca ... ggtgttacagGTCCTCCTGGAGCCAACCTATTTATTTATCATATCCCACAAGAATACGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTGGGAAATTCTCACAATCCGATTAAAGCTCCAAATTCGAATGCCAATTCCACTGTTTCTTCTAGTCCCAGCAGCAATGCTGGTGGGCAGGTTGAAGgttagccacatctgatgctctatgtatgtctattctgtgtatgccctcccttatcatatacaggctgtgctatgaaaatgcataaggaccataacccatcatgtgatcagctaatccgcttcagttttttttatagctgatactgcattgtgttttaaaacccataacctaaaattatggtgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG