1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCCGAGTCGTGTGTATGGATGTCGGGGGTGAATTTGATTAATTTGGATAAATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattgttccaggccagtaaattcatgctatagaatgttgtaaaaaggggatgcttgcattaggccttgttcggttaatccctttccaaggggatt...
species | Zea mays |
transcript | GRMZM2G005103_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAG TTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGCEST: gi|6056564|gb|AW090969.1|AW090969
genomic: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattg ... tctgttacagTTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
EST: CACAGAGAACTATCTGTTGCTCATGCAAAAG TTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGCEST: gi|84976941|gb|DW475363.1|DW475363
genomic: CACAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattg ... tctgttacagTTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
EST: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAG TTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGCEST: gi|76016208|gb|DT943378.1|DT943378
genomic: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattg ... tctgttacagTTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
EST: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAG TTGGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGCEST: gi|40303558|gb|CK347945.1|CK347945
genomic: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattg ... tctgttacagTTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
EST: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAG TTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGCEST: gi|5343265|gb|AI795570.1|AI795570
genomic: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattg ... tctgttacagTTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
EST: CAGAGAACTATCTGTTGCTCATGCAAAAG TTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGCEST: gi|71428143|gb|DR809193.1|DR809193
genomic: CAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattg ... tctgttacagTTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
EST: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAG TTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGCEST: gi|76016209|gb|DT943379.1|DT943379
genomic: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattg ... tctgttacagTTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
EST: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAG TTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGCEST: gi|5608060|gb|AI901727.1|AI901727
genomic: AATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattg ... tctgttacagTTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
EST: CAGAGAACTATCTGTTGCTCATGCAAAAG TTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
genomic: CAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattg ... tctgttacagTTCGAATTCAAGGATGAGCTGTCCCTGCGAGCAGCAGCATTTCCTCTGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCGAGTCGTGTGTATGGATGTCGGGGGTGAATTTGATTAATTTGGATAAATGGAGGGAGCATAATGTCACAGAGAACTATCTGTTGCTCATGCAAAAGgttagtattgttccaggccagtaaattcatgctatagaatgttgtaaaaaggggatgcttgcattaggccttgttcggttaatccctttccaaggggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaag