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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag

Basic information

species Zea mays
transcript GRMZM2G004528_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||  ||||||||||| |||||||||||||| |||||||| ||  |  ||  | |  |    | |  |    |    | |  |  |    |||| ||| |||  ||| |||| || |  |   ||  |   |||||
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa---aaacttagttttggattaaaacttgtccatgtattcttc--tgcag

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
--------------------------------CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag
                                |||||| ||||||||||||||||| || || || ||||||   ||||||||||| ||||||| ||| || || |||||||| ||||||||||| || ||||| | || | |  ||  |||  | |    |   ||  | | ||   |||                                                 
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggtatatttgtt--tcacccatttttcactatttctttctcttgt--cag-------------------------------------------------

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G31450.4 (Glycine max), 5'ss of exon 4
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtc-tgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag
 ||||| |||||||||||||| || || || || ||||||   ||||| ||||| ||||||| |||||| || ||||| || ||||| |||||||| |||||  | ||   |  | ||  |  | |    |   ||  | | | ||  | || ||  |   ||||   |||| || |     |   ||| |   |||||
TAAGGAAATCTCCAAGAGCAATGTTGTTGACGATATGGTCAACAGCAACGCCATCCTCTATGAGCCCGGTGAACATCCAGACCATGTGGTTGTCATTAAGgtaattttttttatttttttatttttagtcactactccctctttca--aattcaattggttattttt-ttgacactt--tggtttattgtt-tttgcag

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag
|||||| ||||||||||||||||| || || || ||||||   ||||||||||| ||||||| ||| || || |||||||| ||||||||||| || ||||| | || | |  ||  |||  | |    |   ||  | | ||       ||  |  |  || | | |||     ||||     ||||| |       
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtatatttgtt--tcacccatttttcactatttctttctcttgtcaggtctttgat-tctatctgctttg----ttgcc-----tttgcag-------

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag
 |||||||||||||| ||||| || ||||| || |||||  | |||||||  || |||| || ||| || || || || || ||||||||||||||||||||   | ||   | |   ||   |  | |||| |||   |     ||| | | |      ||| |     |    ||    |  ||||  |       
TAAGGAGATCTCCAAAAGCAATGTCGTGGACGATATGGTTGCTAGCAATGGTATCCTCTTTGAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGgtaaat-agagaaccggacaga-cactcaaaacctgtttctgttggcaatctgagatcccattgat-ccaatttgtgtgtttgttttgtag-------

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggca---cgtgcagcagtttaaacgtag--atttacattga--aacctgccactcctttgctgca--tgcag
||||||||||||||||||||| || || || ||||||||  | ||||| || || || |||| ||| || ||||| || || ||||| || ||||||||||| | |      | | |||   | |||  |    |  ||   |        ||||  ||  |   |||  || ||   ||| |   ||    ||| ||    |||||
CAAGGAGATCTCCAAGAGCAATGTTGTCGACGACATGGTTGCCAGCAACGCTATCCTGTATGAGCCTGGGGAGCACCCTGACCATGTGGTGGTCATCAAGgtatatcgcagaaccctccttttgtttgtatgtattacaattcagatgctggtttggactcattcattctcactggctaacattatacggtgttgttgatattgcag

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 5'ss of exon 6
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgcc-actcctttgctgcatgcag---------------------------------------
||||||||||||||||||||| || ||||| ||||||||  | |||||| | ||||| || | |||||| || |||||||| || ||| |||| |||||||| |  |      |  |||| | ||  |   |       |  ||  || ||      |   || | | |  ||  || |  |       | |  |   |                                       
CAAGGAGATCTCCAAGAGCAATGTAGTGGACGACATGGTGGCTAGCAATTCGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttatctctactccagccctgcagtcaatgttttcaagc--catttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcag

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
lower sequence: EFJ37320 (Selaginella moellendorffii), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag
|||||| |||||||||||||| ||||| || |||||||| || |||||||||||  | |    |||||| || ||||| ||||||||  | |||||||||||     | |  |   |  |  | |||  |  |    | |  |     | ||     | | |||  |                               
CAAGGAAATCTCCAAGAGCAATGTGGTTGACGACATGGTTTCTAGCAATGCCATCTTGTTCAAGCCCGGTGAACATCCTGATCATGTGATCGTCATCAAGgt---aaaacaaacgcttgatttttttctagggaaaactcccgagtttgctt-----tcgttttctag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32855391|gb|CD995072.1|CD995072
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TACGTGCCGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|32856301|gb|CD995982.1|CD995982
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TACGTGCCGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|110941538|gb|EE161695.1|EE161695
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|32855713|gb|CD995394.1|CD995394
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TACGTGCCGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|6637095|gb|AW261367.1|AW261367
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|6021766|gb|AW066694.1|AW066694
EST:     TGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGNCAGTAA-AGGGCTA-GG-CGAGTAC-C-TCA
genomic: TGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|71756431|gb|DR954368.1|DR954368
EST:     AGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: AGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|91871596|gb|EB401553.1|EB401553
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|71771141|gb|DR969078.1|DR969078
EST:     ATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: ATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|6527007|gb|AW216231.1|AW216231
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|6637051|gb|AW261323.1|AW261323
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGNTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|32854168|gb|CD993849.1|CD993849
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TACGTGCCGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|149071426|gb|EE159821.2|EE159821
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|211029038|gb|FL245284.1|FL245284
EST:     CMATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TACGTGCCGTACGTTGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|32921535|gb|CF026347.1|CF026347
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTA
EST: gi|31364344|gb|CD448699.1|CD448699
EST:     CGGACTTCATCGCCGCTAACCAGGGCTCTCGTGCCAACAATGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG
genomic: CGGACTTCATCGCCGCTAACCAGGGCTCTCGTGCCAACAATGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG
EST: gi|32945128|gb|CF049947.1|CF049947
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TACGTGCCGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|60397539|gb|DN230355.1|DN230355
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|148952105|gb|EC897897.2|EC897897
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|60346856|gb|DN213829.1|DN213829
EST:     ACCAGGGCTCTCGTGCC-ACAATGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG
genomic: ACCAGGGCTCTCGTGCCAACAATGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG
EST: gi|21621348|gb|BQ619354.1|BQ619354
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|32854394|gb|CD994075.1|CD994075
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TACGTGCCGTACGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|148928580|gb|EC873008.2|EC873008
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCA
EST: gi|32920511|gb|CF025323.1|CF025323
EST:     CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAG                         TATGTGCCGTA
genomic: CCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagc ... ctgcatgcagTATGTGCCGTA
EST: gi|67029746|gb|CO458495.1|CO458495
EST:     CGGACTTCATCGCCGCTAACCAGGGCTCTCGTGCCAACAATGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG
genomic: CGGACTTCATCGCCGCTAACCAGGGCTCTCGTGCCAACAATGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAAGATATCAG