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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAACACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctggctttagttatgtagtcttatagataacaaagtttgatcattaaagtaagagagaaacttcaccttagtccgtagtactcatgttgttga...

Basic information

species Zea mays
transcript GRMZM2G003692_T05
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31362808|gb|CD447165.1|CD447165
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGCAG                       
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G-AGgttatccctg ... ctcacagc
EST: gi|67023347|gb|CO452096.1|CO452096
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|32940746|gb|CF045565.1|CF045565
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         C
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcag-
EST: gi|32940746|gb|CF045565.1|CF045565
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         C
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcag-
EST: gi|211495955|gb|FL480154.1|FL480154
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATTGCAAACACATTTTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|71320805|gb|DR797121.1|DR797121
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|211078663|gb|FL128724.1|FL128724
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|60353742|gb|DN220715.1|DN220715
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|5915523|gb|AW053164.1|AW053164
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGCAG                       
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G-AGgttatccctg ... ctcacagc
EST: gi|91877563|gb|EB407520.1|EB407520
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|88757474|gb|DY541615.1|DY541615
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|32909212|gb|CF014024.1|CF014024
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|88753506|gb|DY537647.1|DY537647
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|37387558|gb|CF630976.1|CF630976
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|6022668|gb|AW067596.1|AW067596
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGCAG                       
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G-AGgttatccctg ... ctcacagc
EST: gi|5343223|gb|AI795408.1|AI795408
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|12968787|gb|BG265824.1|BG265824
EST:     GCTGCAGCTTTTTCATCGCAAACACATTCTGCTGAGCAG                       
genomic: GCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G-AGgttatccctg ... ctcacagc
EST: gi|113703640|gb|EE681144.1|EE681144
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|78021266|gb|DV489653.1|DV489653
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGCAG                       
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G-AGgttatccctg ... ctcacagc
EST: gi|211078661|gb|FL128722.1|FL128722
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGCAG                       
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G-AGgttatccctg ... ctcacagc
EST: gi|91872747|gb|EB402704.1|EB402704
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|6101980|gb|AW126450.1|AW126450
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGCAG                       
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G-AGgttatccctg ... ctcacagc
EST: gi|6095476|gb|AW120143.1|AW120143
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|93015973|gb|EB641493.1|EB641493
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACCCATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|71758502|gb|DR956439.1|DR956439
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|37376662|gb|CF624883.1|CF624883
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         C
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcag-
EST: gi|37376662|gb|CF624883.1|CF624883
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         C
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcag-
EST: gi|37390564|gb|CF632514.1|CF632514
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGCAG                       
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G-AGgttatccctg ... ctcacagc
EST: gi|88757473|gb|DY541614.1|DY541614
EST:     CACTACAATCTTCTGTTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|71768646|gb|DR966583.1|DR966583
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|32864069|gb|CF003751.1|CF003751
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
EST: gi|6194694|gb|AW146798.1|AW146798
EST:     CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG                         AAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ctcacagcagAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAACACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctggctttagttatgtagtcttatagataacaaagtttgatcattaaagtaagagagaaacttcaccttagtccgtagtactcatgttgttga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT