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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTTTATAAGAGCTGAGGTGCTTCCTAGTGGTTATCTGATTCGACCTTGTGATGGGGGAGGTTCCATGATTTACATTGTGGATCATGTTGATCTGAATgtgagtagcagcagatctttcatactgagtgggcacttgactaattcattaagatatgcatgtagttttttttttgacttttttagcagatgtgcctaaattatcttgtttttatacag

Basic information

species Zea mays
transcript GRMZM2G003509_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 5'ss of exon 8
AGATTTTATAAGAGCTGAGGTGCTTCCTAGTGGTTATCTGATTCGACCTTGTGATGGGGGAGGTTCCATGATTTACATTGTGGATCATGTTGATCTGAATgtgagtagcagcagatctttcatactga---gtgggcacttgactaattcattaagatatgcatgtagttttttttttgacttttttagcagatgtgcctaaattatcttgtttttatacag
  ||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| || || || ||||||||||||||||| |||||||||||| || |||| |||| ||  ||   ||||| | | |   |||     |||| || ||  || |||||   || |  ||  |  | ||  ||||  ||                                 
GAATTTTATCAGAGCCGAGGTACTTCCCAGTGGTTATCTGATTCGACCATGTGAGGGAGGTGGCTCCATGATTTACATTGTTGATCATGTTGATTTGGATgtaagtaacaatagtgttttcacattaactagtgtaatattgaatagtt--ttgagatacatatcttattaatcctgtgtattttacag---------------------------------

upper sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 8
AGATTTTATAAGAGCTGAGGTGCTTCCTAGTGGTTATCTGATTCGACCTTGTGATGGGGGAGGTTCCATGATTTACATTGTGGATCATGTTGATCTGAATgtgagtagcagcagatctttcatactgagtgggcacttgactaattcattaagatatgcatgtagttttttttttgacttttttagcagatgtgcctaaattatcttgtttttatacag
|  || ||||||||| ||  ||||||||||||| ||||| || ||||||||||| || || || ||||| ||| ||||||| |||||||||||| || |||| || |  |  |  |  || |         ||  ||  | ||    | |  | | |   |||  | ||| | || | ||| |       | |   | |                    
AAGTTATATAAGAGCGGAAATGCTTCCTAGTGGCTATCTAATCCGACCTTGTGAGGGTGGTGGCTCCATTATTCACATTGTTGATCATGTTGATTTGGATgtaagga-taaaatctaattaagctacttcaggttctcaattatccaactgtggtttatttgttttgtttgtctttaatttatctatttgtatatttcag-------------------