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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggtttcacatccacatcctttccatccttgcccattgtgctaaagaaagtttacaacttcgagaaaaatctggtcggttatgttatcttgattgagctttcttattttttttctag

Basic information

species Zea mays
transcript GRMZM2G002859_T02
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71307047|gb|DR789678.1|DR789678
EST:     GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG                         ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: gi|149070323|gb|EE158722.2|EE158722
EST:     GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG                         ATGGTATTTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: gi|33091909|gb|CF051903.1|CF051903
EST:     GAAATTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG                         ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: gi|148986436|gb|EE030178.2|EE030178
EST:     GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG                         ATGGTATTTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: gi|40336986|gb|CK371056.1|CK371056
EST:     GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG                         ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: gi|40335185|gb|CK369255.1|CK369255
EST:     GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG                         ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: gi|60356623|gb|DN223596.1|DN223596
EST:     GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG                         ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: gi|37380473|gb|CF627052.1|CF627052
EST:     GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG                         ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCGGTGGTTGAGAGT
EST: gi|21987351|gb|BQ778879.1|BQ778879
EST:     GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG                         ATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCG
genomic: GAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAGgtctgatggt ... ttttttctagATGGTATCTGAGCGCCAAAGAATCGAAGGAGCACCTCCG