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GGGGAGAACACAAAAATGTCAGCTAGTGACGCAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctgctataaagtttgtttttttagctggaaaaatatcagactacccattttagttgtcccatttaagttatgacgaaagcggttattagaccgaaccaagaattagttgatctcctgcatatatctcttataatttgtttccaatgtttcag
species | Zea mays |
transcript | GRMZM2G002687_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|6020814|gb|AW065742.1|AW065742
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|91876014|gb|EB405971.1|EB405971
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|211179082|gb|FL345825.1|FL345825
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: TCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|71765216|gb|DR963153.1|DR963153
genomic: TCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|9953034|gb|BE639617.1|BE639617
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|149010068|gb|EE041875.2|EE041875
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|149108285|gb|EE292625.2|EE292625
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|111192905|gb|EE291041.1|EE291041
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|110520053|gb|EE024360.1|EE024360
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|67030403|gb|CO459152.1|CO459152
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTTCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|37373821|gb|CF623233.1|CF623233
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|149073833|gb|EE162155.2|EE162155
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTTTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|60354415|gb|DN221388.1|DN221388
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|113701058|gb|EE678562.1|EE678562
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|7844633|gb|AW787855.1|AW787855
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|211181701|gb|FL465356.1|FL465356
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAARGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGTTCCATAGAEST: gi|71305907|gb|DR789080.1|DR789080
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGAEST: gi|166643865|gb|EG146244.1|EG146244
genomic: CAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAATAGAGCTCCATAGA
EST: AAATTCGGCGATATTACGTGACAGATAGTGCTAAAGAAATAAAGACAAAG GTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAA
genomic: AAATTCGGCGATA-TACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctg ... aatgtttcagGTGAATAAATATGCCTTCTCAGGTGGCCAGGACTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGAGAACACAAAAATGTCAGCTAGTGACGCAAATTCGGCGATATACGTGACAGATAGTGCTAAAGAAATAAAGACAAAGgtctgccctgctataaagtttgtttttttagctggaaaaatatcagactacccattttagttgtcccatttaagttatgacgaaagcggttattagaccgaaccaagaattagttgatctcctgcatatatctcttataatttgtttccaatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA