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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCTAGAGAAGATACACACTATCTGTTGTACATATATGATTTAATGAGACAGAGACTACAGAGGGAGTCAACATTTGAAAATGATCTTCTTCTAGAGgtacaagaagtattgtttttgttccggttcccatcttatgtattgagatcataagagaatatacagtttgatattgccacctctttgaatgaatccttaa...

Basic information

species Zea mays
transcript GRMZM2G000749_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000749_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g06190.1 (Oryza sativa), 5'ss of exon 7
GTATGCTAGAGAAGATACACACTATCTGTTGTACATATATGATTTAATGAGACAGAGACTACAGAGGGAGTCAACATTTGAAAATGATCTTCTTCTAGAGgtacaagaagtatt-----gtttttgttccggttcccatcttatgtattgagatcataagagaatatac-agtttgatat-tgccacctctttgaatgaatccttaa
||||||||||||||||||||||||||||||||| || ||||| || |||||   |||||| || | |||||| |||| ||| ||||||||||||||||||||| ||      ||     ||||||  |   ||||  |||| || | || ||    || |||   | |  | |||| ||| | |    | |     |||||      
GTATGCTAGAGAAGATACACACTATCTGTTGTATATGTATGACTTGATGAGGTTGAGACTGCAAAAGGAGTCGACATCTGACAATGATCTTCTTCTAGAGgtaaaaccttagttcactagtttttccttttgttctgatctgattt-ttaagtctgtatgagtgaacattattttggtatatcctttttttccccttgaat------

upper sequence: GRMZM2G000749_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G13920.1 (Glycine max), 5'ss of exon 7
GTATGCTAGAGAAGATACACACTATCTGTTGTACATATATGATTTAATGAG-ACAGAG--ACTACAGAGGGAGTCAACATTTGAAAATGATCTTCTTCTAGAGgtacaagaagtattgtttttgttccggttcccatcttatgtattgagatcat-aagagaatatacagtttgatattgccacctctttgaatgaatccttaa---------
         |||||||||||| |||||| | |||||||||||||| ||||| |  |||  | |    | |           ||||| || |     || |  ||||   || ||| |  |||  | |   || | || || | |||  | |  ||  |   | || |   | | || ||      ||    ||   ||  |            
---------AGAAGATACACATTATCTGCTATACATATATGATTTCATGAGGATTGAGTTATTTTCCATGCTTAAGGAGCCTGAAAGTGTTGACGCTCCACTGGTA---GAGgtaattatttattgctcattgctattttgtttatcaacaaaattgatttagtagagcatct-attttatagagtccagaaacatattttaggtgcgtcata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211021453|gb|FL457596.1|FL457596
EST:     GACAGAGACTACAGAGGGCGTCAACATTTGAAAATGATCTTCTTCTAGAG                         GTCCATAAGCGCAGTAATGAAATTTGCTTACAGTTCTATGAGAAGGAGCTT
genomic: GACAGAGACTACAGAGGGAGTCAACATTTGAAAATGATCTTCTTCTAGAGgtacaagaag ... gttactgcagGTCCATAAGCGCAGTAATGAAATTTGCTTACAGTTCTATGAGAAGGAGCTT
EST: gi|60341236|gb|DN208209.1|DN208209
EST:     GACAGAGACTACAGAGGGAGTCAACATTTGAAAATGATCTTCTTCTAGAG                         GTCCATAAGCGCAGTAATGAAATTTGCTTACAGTTCTATGAGAAGGAGCTT
genomic: GACAGAGACTACAGAGGGAGTCAACATTTGAAAATGATCTTCTTCTAGAGgtacaagaag ... gttactgcagGTCCATAAGCGCAGTAATGAAATTTGCTTACAGTTCTATGAGAAGGAGCTT