Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTGCTGCTTCCAGGTGGCCATGGCCTCATGGTTCGTGGGTATCGTCCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAAgtacgcatatctatccttttcttgttaatttggtaatcactagttgtggtttcacttccaccagccattcctagatcactgatcctgttctttgttcttcag

Basic information

species Zea mays
transcript GRMZM2G000052_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000052_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 5'ss of exon 9
GAGGTGCTGCTTCCAGGTGGCCATGGCCTCATGGTTCGTGGGTATCGTCCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAAgtacgcatatctatcc---ttttcttgttaatttggtaatcactagttgtggtttcacttccaccagccattcctagatcactgatcctgttctttgttcttcag
||||| |||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||||||| |||||||||||||   ||| | ||| ||||||| ||     ||||| |  | | ||   || ||  | |  ||||| ||  |||||||  | ||  | | | |   |   | || | | ||||| ||
GAGGTACTGCTTCCTGGTGGCCATGGTCTCATGGTTCGTGGATATCGTCCAGTAATAAATACTCTGGCAAAAGGCCTAGATATACGCCTTGGCCACAGgtatgcatatccatttagtttttccttctcactttaaaagcaaaattcatggttcca--tccaccattccttatt-gctaatccacattattttcttttctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71764900|gb|DR962837.1|DR962837
EST:     CCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAA                         GGTTGTGGAAATTGTTCGCCATAGGAACAGGGTAGAGGTTACCGTAAGCAG
genomic: CCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAAgtacgcatat ... tgttcttcagGGTTGTGGAAATTGTTCGCCATAGGAACAGGGTAGAGGTTACCGTAAGCAG
EST: gi|60356234|gb|DN223207.1|DN223207
EST:     CCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAA                         GGTTGTGGAAATTGTTCGCCACAGGAACAGGGTAGAGGTTACCGTAAGCAG
genomic: CCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAAgtacgcatat ... tgttcttcagGGTTGTGGAAATTGTTCGCCATAGGAACAGGGTAGAGGTTACCGTAAGCAG
EST: gi|14242894|gb|BG840215.2|BG840215
EST:     CCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAA                         GGTTGTGGAAATTGTTCGCCATAGGAACAGGGTAGAGGTTACCGTAAGCAG
genomic: CCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAAgtacgcatat ... tgttcttcagGGTTGTGGAAATTGTTCGCCATAGGAACAGGGTAGAGGTTACCGTAAGCAG