1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagactttatttttatctgttttatgggagcatcttccacctggcaaaagaagtttatatttcgaaaggaaaaatatctttcactatgtttaaatgca...
species | Zea mays |
transcript | GRMZM5G896731_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG GTTGAAGAGTGTTATATACCACTTCCGTAAGAATCGAGAATTTTGCCGATTEST: gi|60358732|gb|DN225705.1|DN225705
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... agtctatcagGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG GTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTEST: gi|71438321|gb|DR819371.1|DR819371
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... agtctatcagGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG GTTGAAGAGTGTTATATACCACTTTCGTAGGAATCGAGAATTTTGCCGATTEST: gi|89248113|gb|DY619899.1|DY619899
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... agtctatcagGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATT
EST: GTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACANCA-TGG GTTGAAGAGTGTTATATACCACTTTCEST: gi|78085319|gb|DV513712.1|DV513712
genomic: GTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACA-CAATGGgtaagacttt ... agtctatcagGTTGAAGAGTGTTATATACCACTTTC
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG GTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTEST: gi|89250808|gb|DY622594.1|DY622594
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... agtctatcagGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACACTGG GTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTEST: gi|86468848|gb|DY235218.1|DY235218
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... agtctatcagGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG GTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATTEST: gi|78109135|gb|DV527552.1|DV527552
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... agtctatcagGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATT
EST: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG GTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATT
genomic: TGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagacttt ... agtctatcagGTTGAAGAGTGTTATATACCACTTTCGTAAGAATCGAGAATTTTGCCGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGGgtaagactttatttttatctgttttatgggagcatcttccacctggcaaaagaagtttatatttcgaaaggaaaaatatctttcactatgtttaaatgca
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG