1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACGCTGTTGCTGCAAATATGCTGCTCCATGGAATGGAGCATCAAGGCTTTACGACCGCAGAAGGAATTTTTACTGCGGGATGGTCAGAAGAAGGATATGGgtatgccctgtctcacacattgttgagcagaagtttcagattttttttttcagtggtgcagcttttcacattaccttagcagtgcatctcttatctcgtt...
species | Zea mays |
transcript | GRMZM5G895188_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACGACCGCAGAAGGAATTTTTACTGCGGGATGGTCAGAAGAAGGATATGG GTATTTGTTCCAAACACCAGAAGGATGGACCACAGATGGGCATTATAGATCEST: gi|166629201|gb|EG197505.1|EG197505
genomic: ACGACCGCAGAAGGAATTTTTACTGCGGGATGGTCAGAAGAAGGATATGGgtatgccctg ... ggtgctgcagGTATTGGTTCCAAACACCAGAAGGATGGACCACAGATGGGCATTATAGATC
EST: ATGGTCAGAAGAAGGATATGG GTATTGGTTCCAAACACCAGAAGGATGGACCACAGATGGGCATTATAGATCEST: gi|166484001|gb|EG139243.1|EG139243
genomic: ATGGTCAGAAGAAGGATATGGgtatgccctg ... ggtgctgcagGTATTGGTTCCAAACACCAGAAGGATGGACCACAGATGGGCATTATAGATC
EST: GGAATTTTTACTGCGGGATGGTCAGAAGAAGGATATGG GTATTGGTTCCAAACACCAGAAGGATGGACCACAGATGGGCATTATAGATCEST: gi|33771183|gb|CF272844.1|CF272844
genomic: GGAATTTTTACTGCGGGATGGTCAGAAGAAGGATATGGgtatgccctg ... ggtgctgcagGTATTGGTTCCAAACACCAGAAGGATGGACCACAGATGGGCATTATAGATC
EST: ACGACCGCAGAAGGAATTTTTACTGCAGGATGGTCAGAAGAAGGATATGG GTATTGGTTCCAAACACCA
genomic: ACGACCGCAGAAGGAATTTTTACTGCGGGATGGTCAGAAGAAGGATATGGgtatgccctg ... ggtgctgcagGTATTGGTTCCAAACACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCTGTTGCTGCAAATATGCTGCTCCATGGAATGGAGCATCAAGGCTTTACGACCGCAGAAGGAATTTTTACTGCGGGATGGTCAGAAGAAGGATATGGgtatgccctgtctcacacattgttgagcagaagtttcagattttttttttcagtggtgcagcttttcacattaccttagcagtgcatctcttatctcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG