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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCTATTACTTCATCGGCTTTTTCCCAATGCGCGATATTCAATTTGGATTGATGGGAAACTTAAGCTAGTGAGGGATCCTTATCAGGTATTAGAAAGgtaaacagtcacttgttttgcattatgtactcttcacatatatagcttaaggaacatttagatatgctgttagaaattaagttctctagttgccagtgtgactgatgctccatttgctctatcaattttgtcccggtttgttttgatttatctcactacacttatgttacag

Basic information

species Zea mays
transcript GRMZM5G891056_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G891056_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g19870.1 (Oryza sativa), 5'ss of exon 6
CAAAGCTATTACTTCATCGGCTTTTTCCCAATGCGCGATATTCAATTTGGATTGATGGGAAACTTAAGCTAGTGAGGGATCCTTATCAGGTATTAGAAAGgtaaacagtcacttgttttgcattatgtactcttcacat-----atatagcttaaggaacatttagatatgctgttagaaattaagttctctagttgccagtgtgactgatgctccatttgctctatcaattttgtcccggtttgttttgatttatctcactacacttatgttacag
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CAAAATTACTACTTCATCGTCTATTTCCTAATGTGCGGTATTCAATTTGGATTGATGGGAAACTTAAACTAGTGAGGGATCCTTATCAGCTATTAGAGAGgtaaata-tcatattttctcatcaatgtattgattgcatcctgcaaatagttcagggaa----taggtat--cgttgaag--taaattcaatagttgtggctgctatgg--------------------------------------------------------------------