1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGACATTTCTCACTATCAGCAAGCAGTGGGGCAGCGGTGATCAGTTGTCACTCCAGTTACCTATCCACCTAAGGACTGAAGCAATAAAAGgtctggaatttacaagtattttttccccagataaatattttggtgtagattgaattttgaatcgatgcactcattctaggatagttacttaaatttttcactcttaaccattgaaatccctgataattgtatggcaattgacaacattgagtgggactgagcagtgtaactgaaaccaccttcag
species | Zea mays |
transcript | GRMZM5G885766_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGCAATAAAAG ATGACCGGCCGGAGTACGCGTCTATACAAGCAGTCCTGTTC-GGCCGTTCCEST: gi|76912436|gb|DV164731.1|DV164731
genomic: AAGCAATAAAAGgtctggaatt ... ccaccttcagATGACCGGCCGGAGTACGCGTCTATACAAGCAGTCCTGTTCGGGCCGTTCC
EST: TCAGTTGTCACTCCAGTTACCTATCCACCTAAGGACTGAAGCAATAAAAG ATGACCGGCCGGAGTACGCGTCTATACAAGCAGTCCTGTTCGGGGCCGT-CEST: gi|89252904|gb|DY624690.1|DY624690
genomic: TCAGTTGTCACTCCAGTTACCTATCCACCTAAGGACTGAAGCAATAAAAGgtctggaatt ... ccaccttcagATGACCGGCCGGAGTACGCGTCTATACAAGCAGTCCTGTTCGGG-CCGTTC
EST: TCAGTTGTCACTCCAGTTACCTATCCACCTAAGGACTGAAGCAATAAAAG ATGACCGGCCGGAGTACGCGTCTATACAAGCAGTCCTGTTCGGGCCGTTCCEST: gi|149089639|gb|EE178893.2|EE178893
genomic: TCAGTTGTCACTCCAGTTACCTATCCACCTAAGGACTGAAGCAATAAAAGgtctggaatt ... ccaccttcagATGACCGGCCGGAGTACGCGTCTATACAAGCAGTCCTGTTCGGGCCGTTCC
EST: TCAGTTGTCACTCCAGTTACCTATCCACCTAAGGACTGAAGCAATAAAAG ATGACCGGCCGGAGTACGCGTCTATACAAGCAGTCCTGTTCGGGCCGTTCC
genomic: TCAGTTGTCACTCCAGTTACCTATCCACCTAAGGACTGAAGCAATAAAAGgtctggaatt ... ccaccttcagATGACCGGCCGGAGTACGCGTCTATACAAGCAGTCCTGTTCGGGCCGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACATTTCTCACTATCAGCAAGCAGTGGGGCAGCGGTGATCAGTTGTCACTCCAGTTACCTATCCACCTAAGGACTGAAGCAATAAAAGgtctggaatttacaagtattttttccccagataaatattttggtgtagattgaattttgaatcgatgcactcattctaggatagttacttaaatttttcactcttaaccattgaaatccctgataattgtatggcaattgacaacattgagtgggactgagcagtgtaactgaaaccaccttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA