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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGATTTTGGTCTTGCAAGGTTAGCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGGgttagtaaaacagcggcaagttcaagagaacagttaaaacctgcttgtaatctgacacacgcttcttatttag

Basic information

species Zea mays
transcript GRMZM5G872442_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872442_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g02040.1 (Oryza sativa), 5'ss of exon 5
GTTGCTGATTTTGGTCTTGCAAGGTTAGCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGGgttagtaaaaca-----------gcggcaagttcaagagaacagttaaaacctgcttgtaatctgacacacgcttcttatttag
|||||||||||||| ||||||||  |||||||||||||   ||| |||||||| ||||| |||||||||||||| |||| ||||||  |            | |   |  ||||||||||    | |  | | | | |||| |       || ||||  ||
GTTGCTGATTTTGGCCTTGCAAGACTAGCTATGGATGCAGTCACGCATGTAACTACACGGGTGATGGGAACTTTTGGgtaagtaaattactgcctgccttactgagggcacaagagaacatcgtacattttcatatgatctaatgattatttgttatgcag

upper sequence: GRMZM5G872442_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA16G19520.1 (Glycine max), 5'ss of exon 6
GTTGCTGATTTTGGTCTTGCAAGGTTAGCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGGgttagtaaaacagcggcaagttcaagagaacagttaaaacctgcttgta---at--ctgacacacgcttc-ttatttag---------------------------------------------
 |  | |||||||| || || |  |||||  | ||||||   || |||||||||||||| ||| |||||||||||||||  ||||     |  | | |||     |    | |   |||    |||   ||  | ||  || |  || ||  |||                                              
ATCTCGGATTTTGGGCTAGCCAAATTAGCAGTTGATGCTAATACACATGTAACCACACGTGTGGTGGGAACTTTCGGgtgggtaatgt--ctactatttctctttacttttcactccctttgcgtacagattacggattcatgactcatttcttaataatgctcaaacagtaaaaatgattcgttttttccctcttaaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26559092|gb|CA831327.1|CA831327
EST:     GCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGG                         GTACCTTGCTCCAGAGTACGCGTCAAGCGGCAAGTTGACTGAGAGATCTGA
genomic: GCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGGgttagtaaaa ... tcttatttagGTACCTTGCTCCAGAGTACGCGTCAAGCGGCAAGTTGACTGAGAGATCTGA
EST: gi|22520879|gb|BU079690.1|BU079690
EST:     GCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGG                         GTACCTTGCTCCAGAGTACGCGTCAAGCGGCAAGTTGACTGAGAGATCTGA
genomic: GCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGGgttagtaaaa ... tcttatttagGTACCTTGCTCCAGAGTACGCGTCAAGCGGCAAGTTGACTGAGAGATCTGA
EST: gi|71432382|gb|DR813432.1|DR813432
EST:     GCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGG                         GTACCTTGCTCCAGAGTACGCGTCAAGCGGCAAGTTGACTGAGAGATCTGA
genomic: GCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGGgttagtaaaa ... tcttatttagGTACCTTGCTCCAGAGTACGCGTCAAGCGGCAAGTTGACTGAGAGATCTGA
EST: gi|87156672|gb|DY401461.1|DY401461
EST:     GCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGG                         GTACCTTGCTCCAGAGTACGCGTCAAGCGGCAAGTTGACTGAGAGATCTGA
genomic: GCTATGGATGCTTGCACTCATGTAACCACACGAGTGATGGGAACTTTCGGgttagtaaaa ... tcttatttagGTACCTTGCTCCAGAGTACGCGTCAAGCGGCAAGTTGACTGAGAGATCTGA