Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtgatctgcttgtatttgacaatttacatgatgatctccaccatttggtgttctatcag

Basic information

species Zea mays
transcript GRMZM5G868433_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 5'ss of exon 6
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcac---ctggatcctttgtgatctgcttgtatttgacaatttacatgatgatctccaccatttggtgttctatcag
||| || |||||||||||| | || |||||||||||||||||||| ||||| || |||||||| || ||||||||  | |||||| |||||||||||||||||||| | |||||      |     |||  |    |||| ||   | |||  | ||| | |   || |  | ||                     
CCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccaccttgaatctcacttgttctgcttttactgtg-tcaattggtaccttacagtcttggtgtttgtatcag-------------------

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 6
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgc--aatcttgagctctgcacctggatcctttgtgatctgcttgtatttgacaatttacatgatgatctccaccatttggtgttctatcag
||| ||| |||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||    |||||| ||||||| |||||||| ||     |||||    ||     ||  |  | | |   |   ||  |  | |  |  | | |  |   | | |   || |||   | || ||
CCCAAACCTGAAGAGTGTCAGGGAATTGATCTACAAGAGGGGTTACGGAAAGCTCAACAAGCAGAGGATTCCTCTTCAGAACAACAAAGTCATTGAGGAGgtatgtttgctcttgtaggctttcattgtgttgtatatatgccatttacagctaatcaaattcttatttggc-ctattgtt-ggtcaaccattag

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA15G18170.1 (Glycine max), 5'ss of exon 6
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtga----tctgcttg--tatttgacaatttacatgatgatctccacc-atttggtgttctat--cag
||| || ||||||||||| || || |||||||||||||||||||| |||||| | ||||||||||| ||  || || |  |||||    | || ||  ||||  |      || | |||   |     |||| ||| |    |    |||  | ||||     |||| |  |  | | | |  |  |    ||| ||  |||
CCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccg------tgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacattcaatgccag

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtgatctgc-ttg--tatttgacaatttacatgatgatctccaccatttggtgttctat--cag
||| || ||||||||||| |  || |||||||||||||||||||| |||||| | ||||||||||| ||  |  |   | |||||    |  | ||  |||| ||   ||| | |  | |       ||| ||    |||| | |||  | ||||     ||||    |  | ||    |  |    ||| ||  |||
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctg---tctggtgtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT2G01250.2 (Arabidopsis thaliana), 5'ss of exon 6
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtgatctgcttgtatttgacaattta-----catgatgatctccaccatttggtgttcta-tcag-------------------------------------------------------------------------------
||| |||||||||||||||| ||| |||||||||||||| || |||||||| || ||| | ||||||||  || || || |||||    |  | ||| |||||||  ||||    |||||   ||    | | | |  | |  || |  |    | ||||     || ||     ||  ||||          | ||||                                                                               
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcaggctcttggaaagcatggtatcatttgcactgaggatttgatccacgagattctaacagtaggacctcatttcaaggaag

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 6
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtgatctgcttgtatttgacaattta-----catgatgatctccaccatttggtgttcta-tcag
||| |||||||||||||||| ||| |||||||||||||| || |||||||| || ||| | ||||||||  || || || |||||    |  | ||| |||||||  ||||    |||||   ||    | | | |  | |  || |  |    | ||||     || ||     ||  ||||          | ||||
CCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGgtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcag

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 5'ss of exon 5
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtgatctgcttgtatttgacaatttacatgatgatctccaccatt--tggtgttctatcag----------
||| || |||||||||||  | || ||||| ||||||||||| ||||||||  ||||||||||||| |   |  || |  |||||    |  | ||  ||||||  |         |||| | || | |  | | |||  || |||| |   | |  ||   || | | || |     |  || |   || |  |          
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTACGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtc---attctgtatcttggttttctatgag-tgattgtttgctatatcttgt-tgctaacctacttttgtgatgataggctttggggaagtttggt

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 5'ss of exon 6
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtgatctgcttgtatttgacaatttacatgatgatctccaccatttggtgttctatcag
 || || || ||||||||||||||  |||| ||||||||||| || |||||||| ||||||||||| |   ||||| || | |||  | |||| ||  |||||||   |           ||  |  ||  |   ||   ||||   |  || |  || | ||||   | |      | || | ||  |    
TCCCAATTTAAAGAGTGTCAGGGAACTGATTTACAAGAGGGGTTATGGAAAACTTAACAAGCAGAGAACTGCTCTGACTGATAACTCAATCATTGAACAGgtttgttgtaggttaaataacatttatatgttcgatgtattgctataaactggcttttca-atgacattttg----gtatgttattgcag---

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 6
lower sequence: PP1S11_173V6.1 (Physcomitrella patens), 5'ss of exon 5
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgt-ttgcaatcttgagc----tctgcacctggatcctttgtgatctgcttgtatttgacaatt-tacatgatgatctccaccatttggtgttcta-tcag
||||||||||||||||||| ||||||||||||||||| | || ||||||||  | ||||||  | | | | ||||  |  |||||    |||||||  |||| |||  ||  |||      | |  ||  || |    ||  ||  |    | ||||   |||   ||     ||    |   |    | ||  | | | 
CCCGAACTTGAAGAGTGTCCGGGAGTTGATCTACAAGCGTGGGTACGGAAATGTAAACAAGTCGCGCACCGCTCTTACGGACAACACCATCATCGAAAAGgtattgttatagtgactatcttatttactcgggtggaatgacatgggtagttctttgtggattactcaaagctatgattattgtggaatatttaaattaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4753534|gb|AI657444.1|AI657444
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|113650358|gb|DW807850.1|DW807850
EST:     ATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: ATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|15632349|gb|BI679442.1|BI679442
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCAT
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCAT
EST: gi|14701065|gb|BI233483.1|BI233483
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTT
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTT
EST: gi|4646950|gb|AI622025.1|AI622025
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACANCCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|37393037|gb|CF633775.1|CF633775
EST:     CTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: CTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|32932701|gb|CF037513.1|CF037513
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|24764818|gb|CA399980.1|CA399980
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|60358037|gb|DN225010.1|DN225010
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|32945091|gb|CF049910.1|CF049910
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|5915128|gb|AW052769.1|AW052769
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|211318387|gb|FL341244.1|FL341244
EST:     AACTGAACAAGCMGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAANGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGAT
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAA-GCACAACATCATTTGCATTGAGGATCTTGTTCATGAGAT
EST: gi|76922808|gb|DV169184.1|DV169184
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|15554187|gb|BI644185.1|BI644185
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|9733002|gb|BE511754.1|BE511754
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACAT
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACAT
EST: gi|60350172|gb|DN217145.1|DN217145
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|5846778|gb|AI999861.1|AI999861
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|15590144|gb|BI674760.1|BI674760
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTT
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTT
EST: gi|148940442|gb|EC885240.2|EC885240
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|211192857|gb|FL432748.1|FL432748
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|148941047|gb|EC885904.2|EC885904
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|5922428|gb|AW055717.1|AW055717
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|5915120|gb|AW052761.1|AW052761
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|9733001|gb|BE511753.1|BE511753
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|31405831|gb|CD484563.1|CD484563
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGTT                         TGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|78025749|gb|DV494136.1|DV494136
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|4609742|gb|AI600581.1|AI600581
EST:     AAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|32839763|gb|CD979444.1|CD979444
EST:     CCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: CCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|20299953|gb|BQ162896.1|BQ162896
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGC
EST: gi|76922806|gb|DV169183.1|DV169183
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|60338800|gb|DN205773.1|DN205773
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|60355671|gb|DN222644.1|DN222644
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|148935172|gb|EC879210.2|EC879210
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|32796952|gb|CD949188.1|CD949188
EST:     GATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGCTCTTGTTCATGAGATC
genomic: GATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|71438751|gb|DR819801.1|DR819801
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|60344948|gb|DN211921.1|DN211921
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|21987690|gb|BQ779218.1|BQ779218
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|71444618|gb|DR825668.1|DR825668
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|15313112|gb|BI478567.1|BI478567
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|31350410|gb|CD434767.1|CD434767
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|32936880|gb|CF041699.1|CF041699
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|60340627|gb|DN207600.1|DN207600
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|78084905|gb|DV513298.1|DV513298
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|32917266|gb|CF022078.1|CF022078
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|60357671|gb|DN224644.1|DN224644
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|5296239|gb|AI782919.1|AI782919
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|6021537|gb|AW066465.1|AW066465
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGTATTGAGGATCTTGTTCACGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|32866949|gb|CF006631.1|CF006631
EST:     AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 100

CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATCATGACTGTCGGCCCACACTTCAAGGAGGCGAACAACTTCCTTTGGCCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 110

CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATCATGACTGTCGGCCCACACTTCAAGGAGGCGAACAACTTCCTTTGGCCAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 51

CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATCATGACTGTCGGCCCACACTTCAAGGAGGCGAACAACTTCCTTTGGCCAT


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 43

CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatc ... gttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATCATGACTGTCGGCCCACACTTCAAGGAGGCGAACAACTTCCTTTGGCCAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAGGAGgtttgcaatcttgagctctgcacctggatcctttgtgatctgcttgtatttgacaatttacatgatgatctccaccatttggtgttctatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG