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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaacatgcctgccagaaggtcatttttcagtaattgcttctgttcagctttcatctttgatacatccatcctttgctttag

Basic information

species Zea mays
transcript GRMZM5G868168_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868168_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g46740.1 (Oryza sativa), 5'ss of exon 6
GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaacatgcctgccagaaggtcatttttcagtaattgcttctgttcagctttc--atctttgatacatccatcctttg-ctttag
|| ||||||||||| ||  | |||||||||||||| |||||||||||||||||||||||||||||||   |  | ||| ||| |||   |||    |||| |   |    ||    || |  ||||  | | | ||  ||||||| ||||||
GTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTTgtaagaacaattaccttccataagtctattgag-agtagtcaatctacttgtatttactaatctcggtttcctctgtcctttggctttag

upper sequence: GRMZM5G868168_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA18G47600.1 (Glycine max), 5'ss of exon 5
-GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagg---------gaacatgcctgccaga---aggtcatttttcagta--attgcttctgttcagctttcatc--tttgat-acatccatcctttgctttag------------------------------------------
 || || |||||||||||||| ||||||||| | || ||||||||||||||||| || || |||||||           |   |||||   | |   | ||   ||||    |   ||| ||       | ||| ||   |||||| | ||  ||  | | |||                                             
GGTTTTCCAAAGTGCTGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTtgtaagatgcaagcttaactttgcctttgaaacttaagttcctttttgacattgttgtttaaagggtgatttaattgatttgattaaattgattttattcttctaagattcttttatttttttgtttctgacctggttaattgttta

upper sequence: GRMZM5G868168_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 5
GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagg---------gaacatgcctgccaga---aggtcatttttcagta--attgcttct-gttcagctttcatctttgat-acatccatcctttgctttag----------------------------------------------
|| || |||||||| ||||| ||||||||| | || ||||||||||||||||| || || |||||||           |   |||||   | |   | ||   ||||    |  |||| ||   |       | | |  ||||| | || |||  |   |||                                                 
GTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTgtaagatgcaagcttaactttgcctttgaaacttaagttcctttttgacatcattgtttaaagggtgatatacttgattgattaaattcattttagtcttctaagattcttttattttttttttgtttctgacctggataattgttcag

upper sequence: GRMZM5G868168_T04 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0023g00290.t01 (Vitis vinifera), 5'ss of exon 5
GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaacat---gcctgcc---agaaggtcatttttcagtaattgcttctgt-----tcagctttcatctttgata----------catccatcctttgctttag----------------------------------
|||||||| ||||||||||||||||||||| | || ||||||||||||||||| ||||||||||||| ||   |   |  |  |   | ||  | | | ||      |||  |  ||     | |  ||| | ||||  ||           || ||| |||  ||| |                                   
GTCTTTCAGAGTGCTGCACTTTTTGATTCTTTAACTGTTCGTGAAAATGTTGGTTTCCTTTTgtaagagacagtctagtttatctttacaaatttaatgtttttatgttgtcttggtggggcttaattttgacctttattagtttttttactattcatgcttctcttgacctcctaacactgcctattttcttgaattacttag

upper sequence: GRMZM5G868168_T04 (Zea mays), 5'ss of exon 6
lower sequence: EFJ30431 (Selaginella moellendorffii), 5'ss of exon 4
GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaacatgcctgccagaaggtcatttttc-agtaattgcttctgttcagctttcatctttgatacatccatcctttgctttag
|| |||||||| || || || |||||||| ||||||||||| |||||||| |||||  |  ||||||      ||   |      | |   | | | |||| |||  |   ||  | |||   |                          
GTTTTTCAAAGCGCAGCGCTGTTTGATTCGCTCACAGTTCGAGAAAATGTCGGATTTATGCTgtaagaagctgtggtcgttctctgttttctgtccgagtacttgacttgatt--gttttgggcag------------------------

upper sequence: GRMZM5G868168_T04 (Zea mays), 5'ss of exon 6
lower sequence: EFJ22908 (Selaginella moellendorffii), 5'ss of exon 4
GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaacatgcctgccagaaggtcatttttc-agtaattgcttctgttcagctttcatctttgatacatccatcctttgctttag
|| |||||||| || || || |||||||| ||||||||||| |||||||| |||||  |  ||||||      ||   |      | |   | | | |||| |||  |   ||  | |||   |                          
GTTTTTCAAAGCGCAGCGCTGTTTGATTCGCTCACAGTTCGAGAAAATGTCGGATTTATGCTgtaagaagctgtggtcgttctctgttttctatccgagtacttgacttgatt--gttttgggcag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50324151|gb|CO519277.1|CO519277
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|31350150|gb|CD434507.1|CD434507
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAACGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|154130463|gb|EC872173.2|EC872173
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|148986921|gb|EE030732.2|EE030732
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|78103984|gb|DV522402.1|DV522402
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|88757983|gb|DY542124.1|DY542124
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|76931706|gb|DV172823.1|DV172823
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|149004790|gb|EE039293.2|EE039293
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|149078033|gb|EE166771.2|EE166771
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|78120174|gb|DV538558.1|DV538558
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
EST: gi|33467141|gb|CF244190.1|CF244190
EST:     GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA
genomic: GCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagggaac ... tttgctttagATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGA