1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CATGCTTAAGGATGGGCTTTGGGATGTATACAATGATTGTGCCATGGGAATGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaatacagatagcagtaaatgctgtttgttataatattcccatatttttcaagatataagttgtgctatacaacatgtcaatgctggcaattct...
species | Zea mays |
transcript | GRMZM5G866758_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|148999650|gb|EE036638.2|EE036638
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|20300202|gb|BQ163145.1|BQ163145
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|149017000|gb|EE045657.2|EE045657
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|18661821|gb|BM501596.1|BM501596
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: CAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|76284260|gb|DV023828.1|DV023828
genomic: CAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|22490495|gb|BU050418.1|BU050418
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|32864391|gb|CF004073.1|CF004073
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAEST: gi|149081077|gb|EE170177.2|EE170177
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAA
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|18450558|gb|BM428836.1|BM428836
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: CAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|148983224|gb|EE029187.2|EE029187
genomic: CAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|18654813|gb|BM499618.1|BM499618
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: CAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|87152006|gb|DY396795.1|DY396795
genomic: CAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: CAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|148965993|gb|EE016923.2|EE016923
genomic: CAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|20300665|gb|BQ163608.1|BQ163608
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|149009773|gb|EE041672.2|EE041672
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|211292808|gb|FL187022.1|FL187022
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|19821841|gb|BQ047865.1|BQ047865
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|22490486|gb|BU050409.1|BU050409
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|89106507|gb|DY576724.1|DY576724
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|76017959|gb|DT945129.1|DT945129
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAA GATGCATTTGCTATCCEST: gi|71327673|gb|DR800451.1|DR800451
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCC
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGGTGGA-TTGCTGCTCGTGACAGEST: gi|19770473|gb|BQ035194.1|BQ035194
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCG-TGGAATTGCTGCTCGTGACAG
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|31353258|gb|CD437615.1|CD437615
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAATGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|78091716|gb|DV520090.1|DV520090
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|20300437|gb|BQ163380.1|BQ163380
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|67042602|gb|CO468857.1|CO468857
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|19058058|gb|BM736725.1|BM736725
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAATEST: gi|76921562|gb|DV168618.1|DV168618
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|50324587|gb|CO519713.1|CO519713
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAG GATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
genomic: TGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaat ... tcttgaatagGATGCATTTGCTATCCAAAGCAACGAGCGTGGAATTGCTGCTCGTGACAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCTTAAGGATGGGCTTTGGGATGTATACAATGATTGTGCCATGGGAATGTGTGCCGAGCTTTGTGCTGACAACCATGCCCTCACAAGAGAAGACCAGgtctcttaatacagatagcagtaaatgctgtttgttataatattcccatatttttcaagatataagttgtgctatacaacatgtcaatgctggcaattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA