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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTGCAGAGACAATACTATGACATGGGAGATCCCACCAGAACCACATCCACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgaccttgaagttaagctcttgaatggtagatgcaaaaggctgaaatagtctgcatcaaaatgtactagcaacttgacttgataatagttagcaagc...

Basic information

species Zea mays
transcript GRMZM5G863596_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211526374|gb|FL244214.1|FL244214
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523368|gb|FL244201.1|FL244201
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211520355|gb|FL244183.1|FL244183
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523363|gb|FL244196.1|FL244196
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAA
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGA-
EST: gi|211520356|gb|FL244184.1|FL244184
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211520352|gb|FL244180.1|FL244180
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211526376|gb|FL244216.1|FL244216
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523359|gb|FL244192.1|FL244192
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGANCAGGAAACTCNATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523372|gb|FL244205.1|FL244205
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523361|gb|FL244194.1|FL244194
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCANAA
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGA-
EST: gi|211526371|gb|FL244211.1|FL244211
EST:     AACCAAAAACGAAAATATTCCGACACAAAGNTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTC
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTC
EST: gi|211523371|gb|FL244204.1|FL244204
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211526378|gb|FL244218.1|FL244218
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523360|gb|FL244193.1|FL244193
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523364|gb|FL244197.1|FL244197
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523366|gb|FL244199.1|FL244199
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523373|gb|FL244206.1|FL244206
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211520354|gb|FL244182.1|FL244182
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211520363|gb|FL244191.1|FL244191
EST:     CNCCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCA
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCA
EST: gi|211520361|gb|FL244189.1|FL244189
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211526377|gb|FL244217.1|FL244217
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211520362|gb|FL244190.1|FL244190
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211526375|gb|FL244215.1|FL244215
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523369|gb|FL244202.1|FL244202
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523370|gb|FL244203.1|FL244203
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211526373|gb|FL244213.1|FL244213
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211526372|gb|FL244212.1|FL244212
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
EST: gi|211523367|gb|FL244200.1|FL244200
EST:     CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAG                         CAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG
genomic: CACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgacctt ... ctggttgcagCAAAAAGCTGATGGAGCAGGAAACTCAATTTCATTCTCACTTGATGCAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTTGCAGAGACAATACTATGACATGGGAGATCCCACCAGAACCACATCCACCAAAAACGAAAATATTCCGACACAAAGCTCTTCAAACTTTGCTGCAGgtatgaccttgaagttaagctcttgaatggtagatgcaaaaggctgaaatagtctgcatcaaaatgtactagcaacttgacttgataatagttagcaagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG