1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GAGCTGGTGCGGTAGAGTTTATTCTGTGTCATGCAGAAGTTGAGATTGCTTTTGCGGAGGAAAAGAAAATTGATCTGgtatggtttttaccatgcatgcagaattaataggtttgcagtgtctagtgtaatctgtatcatgttaagaaacttatataaaagaaaggtattcttgtgt...
species | Zea mays |
transcript | GRMZM5G861300_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTCATGCAGAAGTTGAGATTGCTTTTGCGGAGGAAAAGAAAATTGATCTG CTCGTGAAGACTTTACCTAAGTCAAATGAGTTCTTAAAAAEST: gi|148986409|gb|EE030148.2|EE030148
genomic: GTCATGCAGAAGTTGAGATTGCTTTTGCGGAGGAAAAGAAAATTGATCTGgtatggtttt ... atttgggcagCTCGTGAAGACTTTACCTAAGTCAAATGAGTTCTTAAAAA
EST: GTCATGCAGAAGTTGAGATTGCTTTTGCGGAGGAAAAGAAAATTGATCTG CTCGTGAAGACTTTACCTAAGTCAAATGAGTTCTTAAAAAEST: gi|8401341|gb|BE056975.1|BE056975
genomic: GTCATGCAGAAGTTGAGATTGCTTTTGCGGAGGAAAAGAAAATTGATCTGgtatggtttt ... atttgggcagCTCGTGAAGACTTTACCTAAGTCAAATGAGTTCTTAAAAA
EST: GTCATGCAGAAGTTGAGATTGCTTTTGCGGAGGAAAAGAAAATTGATCTG CTCGTGAAGACTTTACCTAAGTCAAATGAGTTCTTAAAAA
genomic: GTCATGCAGAAGTTGAGATTGCTTTTGCGGAGGAAAAGAAAATTGATCTGgtatggtttt ... atttgggcagCTCGTGAAGACTTTACCTAAGTCAAATGAGTTCTTAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCTGGTGCGGTAGAGTTTATTCTGTGTCATGCAGAAGTTGAGATTGCTTTTGCGGAGGAAAAGAAAATTGATCTGgtatggtttttaccatgcatgcagaattaataggtttgcagtgtctagtgtaatctgtatcatgttaagaaacttatataaaagaaaggtattcttgtgt
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaaa