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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAATGCAGCAAAGAGTCCAATCATTGCTTCAGCCTGGCTTACAGTTGCTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAGgtactttagttcagtgatggaacagacactcgttcttctccatttggatcttctttttcccatctgatatatatcatttctaaaatgtaacag

Basic information

species Zea mays
transcript GRMZM5G856598_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G856598_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g63290.2 (Oryza sativa), 5'ss of exon 6
TCTGAATGCAGCAAAGAGTCCAATCATTGCTTCAGCCTGGCTTACAGTTGCTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAGgtacttta-----gttcagtgatggaacagaca-------ctcgttcttctcc---atttggatcttctttttcccatctgatatatatcatttctaaaatgtaa-cag
 || |||||||||||||||||| |||| ||||| || ||||||||  | ||||| || ||||| ||||| || |||||||||||  |||||||||| |||||| ||||     |||  |  ||| |  | |            ||| | | ||   ||||||||  |||||| ||| ||||||| |  ||||| ||||| | | | |||
ACTAAATGCAGCAAAGAGTCCAGTCATCGCTTCTGCTTGGCTTACTATCGCTGTAGGTTTGAAGTCCTTTGGTCACTCAGGTTTTCTAGTAAATCTTCAGgtattttacactcgttatgccatgtactatatgaatcttttctgttttccccctcaatttggattctcttttaccc-tctgatacaattcattcctaaacttttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71435181|gb|DR816231.1|DR816231
EST:     CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAG                         GAGATTGCCCCACAATATGCTGGAGTCCTACATG
genomic: CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAGgtactttagt ... aatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
EST: gi|32859895|gb|CD999576.1|CD999576
EST:     GGTTTCTTAGTAAATCTACAG                         GAGATTGCCCCACAATATGCTGGAGTCCTACATG
genomic: GGTTTCTTAGTAAATCTACAGgtactttagt ... aatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
EST: gi|7145129|gb|AW506610.1|AW506610
EST:     CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAG                         GAGATTGCCCCACAATATGCTGGAGTCCTACATG
genomic: CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAGgtactttagt ... aatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG
EST: gi|32921298|gb|CF026110.1|CF026110
EST:     CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAG                         GAGATTGCCCCACAATATGCTGGAGTCCTACATG
genomic: CTGTTGGATTGAAATCCTTCGGCCACTCAGGTTTCTTAGTAAATCTACAGgtactttagt ... aatgtaacagGAGATTGCCCCACAATATGCTGGAGTCCTACATG