1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAAgtgcgtgtttcttttatcattttttcatggtaaagtactattcccattgttgcgtttttttcattagaaacaatgtattccgattctag
species | Zea mays |
transcript | GRMZM5G855347_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGATGTTTTAGAGCGCTTGGCTGGAATAGATACTCTTGTGCTTGATAAA ACAGGGACGCTTACAGAAGGAAAACCAGTAGTGACTTCTATTGCTTCTCTGEST: gi|71435893|gb|DR816943.1|DR816943
genomic: GTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAAgtgcgtgttt ... ccgattctagACAGGGACGCTTACAGAAGGAAAACCAGTAGTGACTTCTATTGCTTCTCTG
EST: GTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAA ACAGGGACGCTTACAGAAGGAAAACCAGTAGTGACTTCTATTGCTTCTCTGEST: gi|74245969|gb|DT653883.1|DT653883
genomic: GTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAAgtgcgtgttt ... ccgattctagACAGGGACGCTTACAGAAGGAAAACCAGTAGTGACTTCTATTGCTTCTCTG
EST: GTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAA ACAGGGACGCTTACAGAAGGAAAACCAGTAGTGACTTCTATTGCTTCTCTG
genomic: GTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAAgtgcgtgttt ... ccgattctagACAGGGACGCTTACAGAAGGAAAACCAGTAGTGACTTCTATTGCTTCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAAgtgcgtgtttcttttatcattttttcatggtaaagtactattcccattgttgcgtttttttcattagaaacaatgtattccgattctag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA