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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatttggcaacttgtttagatttctggaaaaatatttatatatctgataagagacttcttagtcattagaggtacgaaagggtaccttaatcgt...

Basic information

species Zea mays
transcript GRMZM5G850355_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T08 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 4
TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatttggcaacttgtttag---atttctggaaaaatatttatatatctgataagag-----acttcttagtcattagaggtacgaaagggtaccttaatcgt------------------------------------------------------------------------
|||||||||||| ||||| |||||||| |||||||||||||| || || |||||||||||||||||||||||||||||      |||  ||  |  |||     ||   |   | ||   || ||| | |  |||        | || | | | | | |   |     |  | |    | |  |                                                                        
TGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtg--gttttttacagttcatttgatttatacttcagataactattgtatgttttgtaaagacatatatttttcaataaattgctatttcggatagcatgcaatttttcatgtacgacagtcatgatcttttccatcatttacttatttctcatgattgttcttcctttttctaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355411|gb|DN222384.1|DN222384
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211362042|gb|FL326986.1|FL326986
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|6020544|gb|AW065472.1|AW065472
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|32865823|gb|CF005505.1|CF005505
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|15427202|gb|BI543024.1|BI543024
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|14243343|gb|BG841010.2|BG841010
EST:     AGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: AGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|16918711|gb|BM073864.1|BM073864
EST:     AGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTG-GCGAGAGACTGCTGCTGTGATGCAG
genomic: AGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211218837|gb|FL350383.1|FL350383
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211411607|gb|FL320443.1|FL320443
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211372616|gb|FL325639.1|FL325639
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|60359187|gb|DN226160.1|DN226160
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|56382484|gb|CV985153.1|CV985153
EST:     CAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: CAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTG
EST: gi|71331110|gb|DR802381.1|DR802381
EST:     TGGTGAGAAAAAGT-GAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|71331106|gb|DR802380.1|DR802380
EST:     AAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: AAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211062082|gb|FL465318.1|FL465318
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|32868632|gb|CF008314.1|CF008314
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|28931244|gb|CB334605.1|CB334605
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211028588|gb|FL333340.1|FL333340
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211040642|gb|FL333768.1|FL333768
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|60354522|gb|DN221495.1|DN221495
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|8367928|gb|BE050873.1|BE050873
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|31910204|gb|CD651307.1|CD651307
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|5456381|gb|AI834071.1|AI834071
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211227292|gb|FL365228.1|FL365228
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|5895580|gb|AW036826.1|AW036826
EST:     GTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: GTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCA
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|60341905|gb|DN208878.1|DN208878
EST:     AAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: AAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211401638|gb|FL329192.1|FL329192
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTG
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 511

TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 573

TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 497

TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 449

TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG