1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTATGTCGATGTGTCGACGGTTGATGGTGCTACATCCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAGgtagtccctgggccctgccaccgtttacagacccttcctgtacaatgaaactgttcagctgcttgtcccattgtatcaaccaaaagtgtaattgcaatgcctgtacttcgctccagcgctaactcgataacttttcagtag
species | Zea mays |
transcript | GRMZM5G848696_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAG GCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTTEST: gi|50328686|gb|CO523812.1|CO523812
genomic: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAGgtagtccctg ... ttttcagtagGCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTT
EST: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAG GCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTTEST: gi|211130364|gb|FL186938.1|FL186938
genomic: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAGgtagtccctg ... ttttcagtagGCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTT
EST: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAG GCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTTEST: gi|211130360|gb|FL186934.1|FL186934
genomic: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAGgtagtccctg ... ttttcagtagGCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTT
EST: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAG GCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTTEST: gi|5398712|gb|AI812177.1|AI812177
genomic: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAGgtagtccctg ... ttttcagtagGCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTT
EST: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAG GCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTTEST: gi|211130366|gb|FL186940.1|FL186940
genomic: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAGgtagtccctg ... ttttcagtagGCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTT
EST: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAG GCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTTEST: gi|211131283|gb|FL186942.1|FL186942
genomic: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAGgtagtccctg ... ttttcagtagGCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTT
EST: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAG GCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTT
genomic: CCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAGgtagtccctg ... ttttcagtagGCTCCAGTTTCAGGCTCGAAAAAACCAGCAGAAGATGGGCTGCTCATCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGTCGATGTGTCGACGGTTGATGGTGCTACATCCAAGCTGATTGGTGAACGCATTACAAGTACTGGAGCATCTTTCCTTGAGgtagtccctgggccctgccaccgtttacagacccttcctgtacaatgaaactgttcagctgcttgtcccattgtatcaaccaaaagtgtaattgcaatgcctgtacttcgctccagcgctaactcgataacttttcagtag
- - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA