Sequence
atgc intronic sequence ATGC exonic sequenceTGGTTTCTGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAGgtactcacttttctgtactataaacactggtctcattagtgaagctttgatcagctgccattgctccttcaaggcatcgttgtgaatattggttctggaacttctgatatactttgtctagtcagcatatcagtgtctatatttattttctgttctttctttcccaccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 5'ss of exon 6
TGGTTTCTGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAGgtactcacttttctgtactataaacactggtctcattagtgaagctttgatcagctgccattgctccttcaaggcatcgttgtgaatattggttctggaacttctgatatactttgtctagtcagcatatcagtgtctatatttattttctgttctttctttcccaccag
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TGGTTTCTCAGGGATTTGACAGGAATGCTCGGTGGTATACTGTTCACTTTTTATCAGgtgtcaaattctct-tgcta-----actcgaataggcaatgccatctta-----ttgccattgatagtttgtt-tactgatgagataacttgcttggtcagt----attttatttgtcta----------tagggt--gtactaattctttgtgctttcacttttcccag
upper sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT1G13770.2 (Arabidopsis thaliana), 5'ss of exon 5
TGGTTTCTGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAGgtactcacttttctgtactataaacactggtctcattagtgaagctttgatcagctgccattgctccttcaaggcatcgttgtgaatattggttctggaacttctgatatactttgt-ctagtcagcatatcagtgtctatatttattttctgttctttctttcccaccag
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TGGTTTCTGAGGGATTTTACTGGGATGCTTGGAGGTATATTGTTCACATTTTATCAGgtgccta------tgtagcagattcttcccaatcataat--acacatcgattctcttccctt--ttctttaagatttag--------attggttacg----ttcttatttaatgggaactgttctgttcttcag-------------------------------------
upper sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 6
TGGTTTCTGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAGgtactcacttttctg-tactataaacactggtctcattagtgaagctttgatcagctgccattgct---ccttca-----aggcatcgttgtga-atattggttctggaacttctgatatactttgtctagtcagcatatcagtgtctatatttattttctgttctttctttcccaccag
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TGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGgtagactgttctttgctgttgtaatgactattagaaaatatttgtctttatttacttatggatgttgggtttttggctgtaaatgttattgtggcacactttcttagaaattcaaaatatgtttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88755251|gb|DY539392.1|DY539392EST: TGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAG GGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTT
genomic: TGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAGgtactcactt ... ttcccaccagGGATCTAATCTTGATAGCAATGCTAAAATGTGGCGTCTAGTTGCAGACTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTTTCTGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAGgtactcacttttctgtactataaacactggtctcattagtgaagctttgatcagctgccattgctccttcaaggcatcgttgtgaatattggttctggaacttctgatatactttgtctagtcagcatatcagtgtctatatttattttctgttctttctttcccaccag
- - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - TGGAGG