1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGAGTTCAGTGGACCTTACAACACAATGGTTGAGGTTCCTATGATTAGCCGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctatatttctgcctctttggtcgatgggaatttttttatatattttcagattactcttcggcacaccgttctgaactgatttcgacatttcag
species | Zea mays |
transcript | GRMZM5G843914_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAA GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAEST: gi|88756881|gb|DY541022.1|DY541022
genomic: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctata ... gacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
EST: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAA GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAEST: gi|101391015|gb|EB817443.1|EB817443
genomic: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctata ... gacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
EST: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAA GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAEST: gi|211041651|gb|FL024100.1|FL024100
genomic: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctata ... gacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
EST: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAA GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
genomic: CGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctata ... gacatttcagGTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGTTCAGTGGACCTTACAACACAATGGTTGAGGTTCCTATGATTAGCCGGGACAGTCGGAGGCTGAAAGAAGCCGAGGACCTGCTCCAGACTTACAAgtgagctatatttctgcctctttggtcgatgggaatttttttatatattttcagattactcttcggcacaccgttctgaactgatttcgacatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC