1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTTGTGTTTGCAAGCCATTCTTTTGATGTTTGGGAGAGCTGGATGCTGGACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCGgtacacacctttctaattgctattcttcttaggtcaagactagtttgttcttgttcctcaggcctcatttgcagtgtgtttcatagtttttttaaccaac...
species | Zea mays |
transcript | GRMZM5G841360_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCG GCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGACEST: gi|37385549|gb|CF629921.1|CF629921
genomic: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCGgtacacacct ... tcccctgaagGCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGAC
EST: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCG GCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGATEST: gi|60356242|gb|DN223215.1|DN223215
genomic: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCGgtacacacct ... tcccctgaagGCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGAC
EST: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCG GCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGACEST: gi|60358112|gb|DN225085.1|DN225085
genomic: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCGgtacacacct ... tcccctgaagGCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGAC
EST: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCG GCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGACEST: gi|24768536|gb|CA403665.1|CA403665
genomic: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCGgtacacacct ... tcccctgaagGCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGAC
EST: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCG GCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGAC
genomic: ACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCGgtacacacct ... tcccctgaagGCTGTATTGGACATCTGCATTGAGATCCTCGCAGCACCAAGTGAAGAAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGTGTTTGCAAGCCATTCTTTTGATGTTTGGGAGAGCTGGATGCTGGACGGTTCCTTGCTGGAGGGTAGCAAGCTTATCAATTGCAGAAATCCTTCGgtacacacctttctaattgctattcttcttaggtcaagactagtttgttcttgttcctcaggcctcatttgcagtgtgtttcatagtttttttaaccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT