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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTGGTCCCATACTACTTGGAAGAAGAGGCTAACTGGAACCTTGACTTTGCAAACATCCGACAAGCAGTGGCCGAGGCACGTTCGAAGGGAATCACTgtgagtgttctgttgctcttcattgtgctaatcaaaatttcccttctcttgctagtaattccagcgattcatgcatatggcattatgtgcttgccttttc...

Basic information

species Zea mays
transcript GRMZM5G840582_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 5
GTCTCTGGTCCCATACTACTTGGAAGAAGAGGCTAACTGGAACCTTGACTTTGCAAACATCCGACAAGCAGTGGCCGAGGCACGTTCGAAGGGAATCACTgtgagtgttctgttgctcttcattgtgctaatcaaaatttcccttctcttgctagtaattccagcgattcatgcatatggcattatgtgcttgccttttc-----
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TTCTCTCGTGCCATACTACTTAGAAGAAGAGGCTAACTGGGGACTTGACTTCGTCAATCTCCGACAGACTGTGGCGTCAGCGCGGTCAAAGGGAATCACTgtgagtgttttacagaaatttg--ggagtcacggtatcttattcagtcattcatgcaattactgtaa---atgagttcattaccatgttcctgcatacaaaaaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7216933|gb|AW563070.1|AW563070
EST:     TTGCAAACATCCGACAAGCAGTGGCCGAGGCACGTTCGAAGGGAATCACT                         GTTCGAGCGACGGTGATTATAAATCCAGGAAATCCCACTGGCCAGTGCCTT
genomic: TTGCAAACATCCGACAAGCAGTGGCCGAGGCACGTTCGAAGGGAATCACTgtgagtgttc ... cgatgcttagGTTCGAGCGACGGTGATTATAAATCCAGGAAATCCCACTGGCCAGTGCCTT
EST: gi|91048303|gb|EB158721.1|EB158721
EST:     TTGCAAACATCCGACAAGCAGTGGCCGAGGCACGTTCGAAGGGAATCACT                         GTTCGAGCGACGGTGATTATAAATCCAGGAAATCCCACTGGCCAGTGCCTT
genomic: TTGCAAACATCCGACAAGCAGTGGCCGAGGCACGTTCGAAGGGAATCACTgtgagtgttc ... cgatgcttagGTTCGAGCGACGGTGATTATAAATCCAGGAAATCCCACTGGCCAGTGCCTT
EST: gi|78112476|gb|DV530870.1|DV530870
EST:     TTGCAAACATCCGACAAGCAGTGGCCGAGGCACGTTCGAAGGGAATCACT                         GTTCGAGCGACGGTGATTATAAATCCCAGGAAATCCCACTGGCC
genomic: TTGCAAACATCCGACAAGCAGTGGCCGAGGCACGTTCGAAGGGAATCACTgtgagtgttc ... cgatgcttagGTTCGAGCGACGGTGATTATAAATCC-AGGAAATCCCACTGGCC