1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAGCATTCATACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgttgatgcaactattcttcatgacttgatgtacctaccaaaatcatgactcatagtcttgggctctcattgtttttggtgaaatttgaagtgtcaaagtggcggacttctaatttcattcattctacttgttaacag
species | Zea mays |
transcript | GRMZM5G836910_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACAAAGATACTTTCCTGAAGCTAAAG-GCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACCEST: gi|32863795|gb|CF003477.1|CF003477
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACAEST: gi|32802835|gb|CD955071.1|CD955071
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATACTAGGGTACCTTGGTCAGAGTACAEST: gi|5342983|gb|AI795288.1|AI795288
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACAEST: gi|71440750|gb|DR821800.1|DR821800
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGTTCAGAGTACCEST: gi|13515691|gb|BG517967.1|BG517967
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACCEST: gi|149107658|gb|EE189537.2|EE189537
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACCEST: gi|32788347|gb|CD940583.1|CD940583
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACAEST: gi|148941508|gb|EC886438.2|EC886438
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACCEST: gi|78114229|gb|DV532618.1|DV532618
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACCEST: gi|149000841|gb|EE038069.2|EE038069
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACCEST: gi|91056033|gb|EB166451.1|EB166451
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: CTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTA-GGTACCTTGGTCAGAGTACCEST: gi|211140317|gb|FL028762.1|FL028762
genomic: CTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
EST: CAAAGATACTTTCCTGAAGCTAAGGTGCTGATATCGTCGCCCTACCTGGG GTAAC-ACAAGAEST: gi|211139376|gb|FL028747.1|FL028747
genomic: CAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCC-TACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGA
EST: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGGCTACCTGGG GTAAC-ACAAGAA-ATCTTCEST: gi|26557367|gb|CA829602.1|CA829602
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTC
EST: ACAAAGATACTTTCCTGAAGCTAAAG-GCTGATATCGTCGCCTACCTGGG GTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAATACC
genomic: ACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgt ... ttgttaacagGTAACCACAAGAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAGCATTCATACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGCCTACCTGGGgtaagtatgttgatgcaactattcttcatgacttgatgtacctaccaaaatcatgactcatagtcttgggctctcattgtttttggtgaaatttgaagtgtcaaagtggcggacttctaatttcattcattctacttgttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT