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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatcttctcgtagcttcttcgttcagtccttgtcatgcacgtgaagttgctcgggcaacagaatacttactgatcactgccactcatctccctctttgcattgtgacgcgcgcgcgcgcag

Basic information

species Zea mays
transcript GRMZM5G836250_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G836250_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g64660.1 (Oryza sativa), 5'ss of exon 7
CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatcttctcgtagcttcttcgttcagtccttgtcatgcac---gtgaagttgctcgggcaacagaatacttactgatcactgccactcatctccctctttgcattgtgacgcgcgcgc-gcgcag
|| |||||||| ||||||| |||||||||||||||||| || || || || || |||||||||||| |||| |||||||||||||||||| |||       |   || ||   | | |  || | |  ||    ||   | | ||   |      |||    |||||| |  |      ||   | | | ||  || |      | | | | ||||
CTTGTTCTGAGTACTGGAAATGGTGTCAATGGCTTCACACTTGATCCATCTCTCGGGGAGTTCATATTAACTCATCCAGACATCAAGgtt-tataagacaatt-ttttttgactaactgtttatgagacaattagtagtgatacttccgtcttttaatgtacactgatgagcgggcaaaatactcatatgtgtgttctatgcttcactctgtgcag

upper sequence: GRMZM5G836250_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0072g00770.t01 (Vitis vinifera), 5'ss of exon 7
CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatcttctcgtagcttcttcgttcagtccttgtcatgcacgtgaagttgctcgggcaacagaatacttactgatcactgccactcatctccctctttgcattgtgacgcgcgcgcgcgcag
|| ||  | ||||||||||||||||| ||||| || || || || || |||||||||||||||||||| || || ||| |||| ||||| | || |     | |  | |  |  || ||     |||  || ||  |||   |         |||| || |         | |||      | ||||      |  | | | |         
CTTGTGTTAAGCACTGGAACTGGTGTTAATGGATTTACCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAGgtaagatttatcatttgactgtcagaacaatca----cattaacatgctgttttcc------tctaatattttcc--------ctacttgctgacatcttaaggaggatatgtgggaa-------

upper sequence: GRMZM5G836250_T02 (Zea mays), 5'ss of exon 6
lower sequence: PP1S385_43V6.1 (Physcomitrella patens), 5'ss of exon 7
CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgtt-atatcttctcgtagcttctt--cgttcagtccttgtcatgcacgtgaagttgctcgggcaacagaatacttac-tgatcactgccactcatctccctctttgcattgtgacgcgcgcgcgcgcag
 | || |||||||| ||  |||| || ||||||||||| ||||| ||||||||||||||||||||  | || || || |||||||||||| ||||||    ||   ||  |  | ||  ||  |  | ||   | | ||     |   |       | | || | ||| |    ||   ||  ||| |                            
TTGGTACTGAGCACAGGTGCTGGGGTTAATGGCTTCACCCTCGATCCTTCACTTGGGGAGTTCATCTTGACGCACCCTGACATCAAGgtttatatctgtatgtcctttgatgacatttcgtgttc-taattttcctaaatgcatttaagtgttcccacatttgcatgaactaaaccctacaagtccgt----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105896|gb|DV524314.1|DV524314
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACTTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|76282214|gb|DV021782.1|DV021782
EST:     CAGACATCAAG                         ATACCTAGGAGGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149085230|gb|EE174737.2|EE174737
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149056940|gb|EE156494.2|EE156494
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGGAGATCT
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCT
EST: gi|89759141|gb|DY688054.1|DY688054
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|93284534|gb|EB676798.1|EB676798
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|83279121|gb|DV943129.1|DV943129
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|50324976|gb|CO520102.1|CO520102
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAGGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|50327741|gb|CO522867.1|CO522867
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|89759142|gb|DY688055.1|DY688055
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCCACGAAGGGGACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149088446|gb|EE177549.2|EE177549
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTNCA-CGAAGGGAACGCCAAGAA
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGT-CAACGAAGGGAACGCCAAGAA
EST: gi|71768088|gb|DR966025.1|DR966025
EST:     CGCTCGACCCCTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149095912|gb|EE181574.2|EE181574
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|32838746|gb|CD978427.1|CD978427
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|71770843|gb|DR968780.1|DR968780
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCTACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149085229|gb|EE174736.2|EE174736
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|148932776|gb|EE285437.2|EE285437
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAANGGGA-CGCCAAGAA
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAA-GGGAACGCCAAGAA
EST: gi|148929799|gb|EE285436.2|EE285436
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|32920564|gb|CF025376.1|CF025376
EST:     CGCTCGACCCTTCACTTGGCGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|88752752|gb|DY536893.1|DY536893
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|71770842|gb|DR968779.1|DR968779
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149064612|gb|EE286483.2|EE286483
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|71317307|gb|DR795338.1|DR795338
EST:     TTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: TTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|74244032|gb|DT651946.1|DT651946
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|110201016|gb|EC882913.1|EC882913
EST:     GCTTG-CCCTTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: GCTCGACCC-TTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|94476278|gb|EB705236.1|EB705236
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|50332538|gb|CO527664.1|CO527664
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|71757120|gb|DR955057.1|DR955057
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: gi|149099889|gb|EE185942.2|EE185942
EST:     CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG                         ATACCTAAGAAGGGGAAGATTTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC