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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTAGAGCATTGGCTTACATTCATGGTACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctggagattcttctattttgctcctgtatcattttcagatgaaatggtttggtacttagaaattgattttcaaacttcactacag

Basic information

species Zea mays
transcript GRMZM5G835235_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835235_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g14860.3 (Oryza sativa), 5'ss of exon 5
ATATGTAGAGCATTGGCTTACATTCATGGTACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctggag-attctt--ctattttgctcctgtatcattttcagatgaaatggtttggtacttagaaattgattttcaaacttcactacag
|| ||||| ||||| |||||||| |||  ||  ||||| || |||||||||||||| |||||||| |||||||||||||||| ||   || ||  | |||   |||   || ||   ||  ||       | ||  ||||   ||||||| ||  ||||||    |||
ATTTGTAGGGCATTAGCTTACATCCATAATAGCATCGGAGTTTGCCACAGAGATATCAAGCCACAGAATCTTCTGgtatgcttgaatgttgttacccattcatctcaaataccaccctcttatt------tctgtaactttataattgatgtttgaacttctaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213187425|gb|FM190443.1|FM190443
EST:     CGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTNNNG                         GTGAACCCACACACCCACCAACTTAAAATATGTGACTTTGGTAGTGCAAA
genomic: CGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTT-CTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAA
EST: gi|67039601|gb|CO465856.1|CO465856
EST:     ATGGTACAATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTG                         GTGAACC-ACACACCCACCAGCTTAAA-TATGTGACTTTGGTAGTGCAAAA
genomic: ATGGTACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
EST: gi|33093876|gb|CF053870.1|CF053870
EST:     ACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTG                         GTGAACCCACACACCCACCAGCTTGAAATATGTGACTTTGGTAGTGCAAAA
genomic: ACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
EST: gi|213187001|gb|FM192338.1|FM192338
EST:     ATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATNNNTCTG                         GTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAA
genomic: ATCGGTGTCTGCCACAGAGATATTAAGCCACAAAAT-CTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAA
EST: gi|20803001|gb|BQ294051.1|BQ294051
EST:     GTCTGCC-CAGAGATATTAAGCCACAAAATCTTCTG                         GTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
genomic: GTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
EST: gi|32830913|gb|CD970591.1|CD970591
EST:     ACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTG                         GTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
genomic: ACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
EST: gi|32865481|gb|CF005163.1|CF005163
EST:     ATGGGACTATCGGGGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTG                         GTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
genomic: ATGGTACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
EST: gi|32865499|gb|CF005181.1|CF005181
EST:     ATGGTACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTG                         GTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
genomic: ATGGTACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
EST: gi|32830394|gb|CD970072.1|CD970072
EST:     ACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTG                         GTGAACCCACACTCCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
genomic: ACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
EST: gi|32831124|gb|CD970802.1|CD970802
EST:     ACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTG                         GTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
genomic: ACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
EST: gi|211480778|gb|FL342573.1|FL342573
EST:     ATGGTACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTG                         GTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
genomic: ATGGTACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA
EST: gi|26456580|gb|CA828163.1|CA828163
EST:     ATGGTACTATCGG-GTCTGCCACAGAGATATTAAGCCACAAAATCTTCTG                         G-GAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAG-GCAAAA
genomic: ATGGTACTATCGGTGTCTGCCACAGAGATATTAAGCCACAAAATCTTCTGgtatgctgga ... ttcactacagGTGAACCCACACACCCACCAGCTTAAAATATGTGACTTTGGTAGTGCAAAA