1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTATCGACCCGTTTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttcttggcattgaaatgctaatcttgaactgtgtggtacatttcaatcatctcgagttttttttttttttgaaattttggtgcctctattccttt...
species | Zea mays |
transcript | GRMZM5G834205_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|93015304|gb|EB640824.1|EB640824
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|93015622|gb|EB641142.1|EB641142
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|149083864|gb|EE173239.2|EE173239
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|71428013|gb|DR809063.1|DR809063
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|9953455|gb|BE640038.1|BE640038
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCATACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGNCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|78107222|gb|DV525640.1|DV525640
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCTAEST: gi|71421501|gb|DR805467.1|DR805467
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCTA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCTAEST: gi|211276223|gb|FL230638.1|FL230638
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCTA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|149102741|gb|EE288090.2|EE288090
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|71320275|gb|DR796886.1|DR796886
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|76291818|gb|DV031386.1|DV031386
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|76291817|gb|DV031385.1|DV031385
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|78116688|gb|DV535075.1|DV535075
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|76282167|gb|DV021735.1|DV021735
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|101391432|gb|EB817651.1|EB817651
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: GAAAGCTCAACAGGAAGGGCACACTCAGCCTGTTCCGGATGCAAGTATAG TCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCTEST: gi|76924364|gb|DV169917.1|DV169917
genomic: G-AAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagtatagTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCT
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTEST: gi|148952812|gb|EC898804.2|EC898804
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCT
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|32837204|gb|CD976882.1|CD976882
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|76021099|gb|DT948269.1|DT948269
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|71326004|gb|DR799684.1|DR799684
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|149105966|gb|EE291599.2|EE291599
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCTAGTATAG TCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCTEST: gi|76924362|gb|DV169916.1|DV169916
genomic: TGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC-A--A--Ggtactttctt ... ttcagtatagTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCT
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|89249854|gb|DY621640.1|DY621640
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|148938286|gb|EC882590.2|EC882590
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|71428014|gb|DR809064.1|DR809064
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGTCAGTATAG TCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTTATTCTEST: gi|86472430|gb|DY238800.1|DY238800
genomic: TGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATG-CA--A--Ggtactttctt ... ttcagtatagTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCT
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|149085134|gb|EE174639.2|EE174639
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|76927739|gb|DV171347.1|DV171347
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|149088092|gb|EE287276.2|EE287276
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|71326005|gb|DR799685.1|DR799685
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGTCAGTATAG TCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATEST: gi|149059924|gb|EE157051.2|EE157051
genomic: TGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATG-CA--A--Ggtactttctt ... ttcagtatagTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGAT
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|84970062|gb|DW468434.1|DW468434
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|74245587|gb|DT653501.1|DT653501
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|78091790|gb|DV520164.1|DV520164
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|149085242|gb|EE174748.2|EE174748
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|50339159|gb|CO534285.1|CO534285
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|76281749|gb|DV021317.1|DV021317
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|71421504|gb|DR805468.1|DR805468
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCTAEST: gi|149105965|gb|EE291598.2|EE291598
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAATTCTA
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|48690727|gb|CO049262.1|CO049262
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: GCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAGEST: gi|149095623|gb|EE174749.2|EE174749
genomic: GCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAG TATAGTCCAGAAAGCCTCTAGTGTEST: gi|93017402|gb|EB642922.1|EB642922
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttctt ... ttcagtatagT-----CCAGAAAGCCTCTAGTGT
EST: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGTATAG
genomic: TTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGC----A-AGgtactttctt ... ttcagt
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTATCGACCCGTTTGACTGAAGCTCAACAGGAAGTGCACACTCAGCCTGTTCCTGATGCAAGgtactttcttggcattgaaatgctaatcttgaactgtgtggtacatttcaatcatctcgagttttttttttttttgaaattttggtgcctctattccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA