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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTTCTACAGATATTGAAACTCAGCAAGCTCATGAATTCTCTATTTATCTTGTCTTGCCATTCCTAACCATTTCATTAGCTCTGCTAGCTTTTAACTGgtatgggccatgagaaacacactggatctgttcaaatcagagttttatttacctttttttttctttggagaaaaatcatgacacctatgcatcag

Basic information

species Zea mays
transcript GRMZM5G827205_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G827205_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g46640.1 (Oryza sativa), 5'ss of exon 6
CATCTTCTACAGATATTGAAACTCAGCAAGCTCATGAATTCTCTATTTATCTTGTCTTGCCATTCCTAACCATTTCATTAGCTCTGCTAGCTTTTAACTGgtatgggccatgagaaacacactggatctgttcaaatcagagttttatttacctttttttttctttggagaaaaatcatg-acacctatgcatcag
 ||||||||| || |||||| | || ||||| |||| |||||| |||||||||||| |||| ||| | |||| |||||||||| |||| || ||||||||||| || ||||| ||| ||  |   || | || |||  | |   || |||  |||| |||        ||||  |   || |    | || |||||
GATCTTCTACGGACATTGAAGCGCAACAAGCCCATGCATTCTCGATTTATCTTGTCCTGCCTTTCTTGACCACTTCATTAGCTTTGCTCGCATTTAACTGgtaaggaccatgggaagcatgc-acatttatttaaagaaaaaagttcttttgctttgtttcag---aaagaatgactttgtatgtgtgtgtatcag