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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttttggcaacttgctaagttagatttctggaaaatatttatatatctggtaagagacttcttacatgccttagaggtatgaagaggtacttta...

Basic information

species Zea mays
transcript GRMZM5G824831_T08
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824831_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 4
TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttttggcaacttgctaagttagatttctggaaaatatttatatatctggtaa-gagac---ttcttacatgccttagaggtatgaagag---gtacttta-------------------------------------------------------------------------
|||||||||||| |||||||||||||| ||||| |||||||| || || ||||| || ||||||||||||||||||||    |||||  ||  |   |   ||     |   || ||   || ||| | | |||| || |    || ||  ||   ||     |  | | ||   | | |||                                                                          
TGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtgg--ttttttacagttcatttgatttatacttcagataactattgtatgttttgtaaagacatatatttttcaataaattgctatttcggatagcatgcaatttttcatgtacgacagtcatgatcttttccatcatttacttatttctcatgattgttcttcctttttctaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148956338|gb|EC902144.2|EC902144
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211252219|gb|FK953400.1|FK953400
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|148952476|gb|EC898302.2|EC898302
EST:     TGGTGAGGAAAAGACGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|71447361|gb|DR828411.1|DR828411
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211156514|gb|FL164228.1|FL164228
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211153314|gb|FL164202.1|FL164202
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAG
EST: gi|211252212|gb|FK953393.1|FK953393
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|149076954|gb|EE165611.2|EE165611
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211264909|gb|FL208725.1|FL208725
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|6952542|gb|AW424610.1|AW424610
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211156519|gb|FL164233.1|FL164233
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGAC
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGAC
EST: gi|211264914|gb|FL208730.1|FL208730
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|32864839|gb|CF004521.1|CF004521
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCA
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCA
EST: gi|148987620|gb|EE031494.2|EE031494
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211252214|gb|FK953395.1|FK953395
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|71445140|gb|DR826190.1|DR826190
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211154915|gb|FL164213.1|FL164213
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTC
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTC
EST: gi|211149323|gb|FL312581.1|FL312581
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211252217|gb|FK953398.1|FK953398
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTTGTACGAGAGACTGCTGCTGTCATGCA
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTT-GTACGAGAGACTGCTGCTGTCATGCA
EST: gi|91875485|gb|EB405442.1|EB405442
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211154922|gb|FL164220.1|FL164220
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211252215|gb|FK953396.1|FK953396
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|6194486|gb|AW146590.1|AW146590
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211158115|gb|FL164244.1|FL164244
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCTGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|74241051|gb|DT648965.1|DT648965
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|78112697|gb|DV531091.1|DV531091
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|67024880|gb|CO453629.1|CO453629
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211252210|gb|FK953391.1|FK953391
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|148931204|gb|EC873960.2|EC873960
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|32795340|gb|CD947576.1|CD947576
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211321302|gb|FL273340.1|FL273340
EST:     TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211153313|gb|FL164201.1|FL164201
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GA-CATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
EST: gi|211153309|gb|FL164197.1|FL164197
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG                         GAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG
genomic: TGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAGgtatactttt ... ccaaatgcagGAACATATACCTGTAACACAGCTTGTACGAGAGACTGCTGCTGTCATGCAG