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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttgtatttaacaagcacttcttgcatatagttactgtggtcttattggaaccagacttgattgtttttccttgccattgtag

Basic information

species Zea mays
transcript GRMZM5G818887_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G818887_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g10290.2 (Oryza sativa), 5'ss of exon 6
GTATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttgtatttaacaagcacttcttgcatatagttactgtggtcttattggaaccagacttgattgtttttccttgccattgtag
 |||||||| || |||||||| |||||||||||||| || |||||||| ||||||| |  | |    |  |      |||||  |  |||      | |       |||   || |   ||  ||||  |||   ||| ||
ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAGgtaagtcattttgccattagaagtgtcttgt-tgcagtcctgaagat-------gaagttgattcatttaatttta-ttgttgttgcag

upper sequence: GRMZM5G818887_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g41110.1 (Oryza sativa), 5'ss of exon 6
GTATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaa---attttgtatttaacaagcacttcttgcatatagttactgtggtcttattggaaccagacttgattgtttttccttgccattgtag
 ||||| || || |||||||| |||||||||||||| || |||||||| |||||||   ||||||   |||  |    ||| |||||  |  | |   ||   ||  |  |   | | ||||||||| || |            
ATATGATAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAGgtaagtcattttgcccttagaagtgtcttgttgca-gtcttgaagatgaagttgattcattta-atttgattgttgttgcag----------

upper sequence: GRMZM5G818887_T02 (Zea mays), 5'ss of exon 6
lower sequence: EFJ14759 (Selaginella moellendorffii), 5'ss of exon 6
GTATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttgtatttaacaagcacttcttgcatatagttactgtggtcttattggaaccagacttgattgtttttccttgccattgtag
||||||| |||||| ||||  |||| | || ||||||||||||||||||||||||| ||  | ||||     |    | || |||| ||||  ||  | | |  ||  |  |   |  | |                    
GTATGACCAGTACTTCCAAGTTCCAAGAGTATGGCTAACTGGATATGACGAGgtaa-ttaagcattt---tcgtctgtgttacatacagtt--tgctgacatgctgacataactttgaactcacag---------------

upper sequence: GRMZM5G818887_T02 (Zea mays), 5'ss of exon 6
lower sequence: EFJ26505 (Selaginella moellendorffii), 5'ss of exon 6
GTATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttgtatttaacaagcacttcttgcatatagtt-actgtggtcttattggaaccagacttgattgtttttccttgccattgtag
||||||| |||||| ||||  |||| | || ||||||||||||||||||||||||| ||  | ||||     |    | || |||| ||||  |||   |    ||| |  || |                           
GTATGACCAGTACTTCCAAGTTCCAAGAGTATGGCTAACTGGATATGACGAGgtaa-ttaagcattt---tcgtctgtgttacatacagtttgctgacataaatttgaactcacag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211329322|gb|FL012784.1|FL012784
EST:     TGACAAGTACTACCAAACTCCACGTGTCTGGGCTA-CTGGATATGACGAG                         TCAAGAATGC-ATTAATGCCCTGA-CTTGTGTTTGAAGACTTC-GCCAAGA
genomic: TGACAAGTACTACCAAACTCCACGTGTCTGG-CTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCC-TGAACTTGTGTTTGAAGACATCAGCCAAGA
EST: gi|86470328|gb|DY236698.1|DY236698
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|32809166|gb|CD961400.1|CD961400
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCC
EST: gi|18179571|gb|BM380781.1|BM380781
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|211295447|gb|FL439736.1|FL439736
EST:     TGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: TGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|78113030|gb|DV531424.1|DV531424
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|148960724|gb|EE011368.2|EE011368
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|32804145|gb|CD956381.1|CD956381
EST:     ATGACAAGTACTACCAA-CTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTA
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTA
EST: gi|76013821|gb|DT940991.1|DT940991
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|148971663|gb|EE022386.2|EE022386
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|50331764|gb|CO526890.1|CO526890
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|211435031|gb|FL327502.1|FL327502
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|60342765|gb|DN209738.1|DN209738
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|78091451|gb|DV519825.1|DV519825
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|78091450|gb|DV519824.1|DV519824
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|67010369|gb|CO439118.1|CO439118
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTNGA-GACATCAGCCAAGA
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTT-GAAGACATCAGCCAAGA
EST: gi|149045355|gb|EE047779.2|EE047779
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATC
EST: gi|78022213|gb|DV490600.1|DV490600
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|211389689|gb|FL031640.1|FL031640
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|32826943|gb|CD966621.1|CD966621
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTA
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTA
EST: gi|110482572|gb|EE011367.1|EE011367
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|60393918|gb|DN226788.1|DN226788
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|37374451|gb|CF623583.1|CF623583
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|87156323|gb|DY401112.1|DY401112
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTG
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTG
EST: gi|76013820|gb|DT940990.1|DT940990
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|71313247|gb|DR793147.1|DR793147
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|71313249|gb|DR793148.1|DR793148
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TNCA-GAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGA
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagT-CAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGA
EST: gi|76016276|gb|DT943446.1|DT943446
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|15100603|gb|BI396394.1|BI396394
EST:     TGGATATGCCGAG                         TCCAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: TGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|76016277|gb|DT943447.1|DT943447
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
EST: gi|78113031|gb|DV531425.1|DV531425
EST:     ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAG                         TCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC
genomic: ATGACAAGTACTACCAAACTCCACGTGTCTGGCTAACTGGATATGACGAGgtaaattttg ... gccattgtagTCAAGAATGCCATTAATGCCTGAACTTGTGTTTGAAGACATCAGCCAAGAC