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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTATAATACTAGTGGTTGCTTACTGTTGATTTTTATATGCAGTTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGAgtatgttgctattcgtttatttttttttattttttttaacgagagaattcatctctggaaccttgatgctcatacgggtttcctctccaccag

Basic information

species Zea mays
transcript GRMZM5G813363_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G813363_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 5'ss of exon 9
TTGTATAATACTAGTGGTTGCTTACTGTTGATTTTTATATGCAGTTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGAgtatgttgctattcgtttatttttttttattttttttaacgagagaattcatctctggaaccttgatgctcatacgggtttcctctccaccag
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--------------------------------------------TTGCTTGATGAGAGGCAGGGTGAAAATATCTGGCGGTTTCTTCACTCGATAAATGAgtacgcgttacctcctttaattttgttt--cctagtcaatgggaatact------tcatatcttggagctcatataaactaca-ctccatcag