1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACACGACTTGAAATGTTGTCCAAGAAGTATGGGTGCACACCTGCTCAACTCGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcctgacatcatatattcatatgttaatactgaagatcatgtttatgttctactctgcctatgagcagggtcaaacctttccatcaacaaacca...
species | Zea mays |
transcript | GRMZM5G813143_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGCTCTCTCCTGGGTTTTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGTTGTAAAGGTAAEST: gi|76292810|gb|DV032378.1|DV032378
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|88747188|gb|DY531329.1|DY531329
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTTTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|211464993|gb|FL442786.1|FL442786
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|76021183|gb|DT948353.1|DT948353
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|91875442|gb|EB405399.1|EB405399
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|78114482|gb|DV532871.1|DV532871
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTTTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|89250463|gb|DY622249.1|DY622249
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAGGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|89761100|gb|DY689250.1|DY689250
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|76288051|gb|DV027619.1|DV027619
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|101392432|gb|EB818145.1|EB818145
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|89755224|gb|DY685733.1|DY685733
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|76011255|gb|DT938425.1|DT938425
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|60355056|gb|DN222029.1|DN222029
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|91873436|gb|EB403393.1|EB403393
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|78112031|gb|DV530427.1|DV530427
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAAEST: gi|60341512|gb|DN208485.1|DN208485
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
EST: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTG GAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
genomic: CGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcct ... ctgaatccagGAACAACAAAAGCCAAGAACCTTGACGAAAATATCGGTGCTGTAAAGGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACGACTTGAAATGTTGTCCAAGAAGTATGGGTGCACACCTGCTCAACTCGCTCTCTCCTGGGTTCTTCATCAAGGAGAAGATGTGGTCCCCATCCCTGgtaatgtcctgacatcatatattcatatgttaatactgaagatcatgtttatgttctactctgcctatgagcagggtcaaacctttccatcaacaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG