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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgtttcctctcctgtgcgagctacatatgacttggttatttgttaacctttatttcctgtaaaattgcttttgtttctttttaccag

Basic information

species Zea mays
transcript GRMZM5G812553_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G812553_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g03400.2 (Oryza sativa), 5'ss of exon 6
CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgtttcctctcctgtgcgagctacatatgacttggttatttgttaacctttatttcctgtaaaattgcttttgtttctttttaccag
|||||||||||||||||||| ||||| |||||  |||||||||||||||||||||       |||| |    | |||||||||   |     || | |||||| || || |  | |  || ||||  |||  |   |||||
CTCATTCCACTTGGAACTGGTTCAGACTTTGCAAGGACATTTGGCTGgtatattt-------ctccagcataatctacatatggtgt-----ttagataacctctactttcactgatgtttctttc-ttttgtgcaaccag

upper sequence: GRMZM5G812553_T02 (Zea mays), 5'ss of exon 6
lower sequence: EFJ04852 (Selaginella moellendorffii), 5'ss of exon 6
CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgtttcctctcctgtgcgagctacatatgacttggttatttgttaacctttatttcctgtaaaattgcttttgtttctttttaccag
||||| || |||||||| ||||| ||||||||||| ||||| |||||||| | |  |||||  |  ||||  |  |   | | |  |   ||||  | |||||| |        |                          
CTCATCCCTCTTGGAACAGGCTCGGATTTTGCTCGAACATTCGGCTGgtaaact--tttcccgttttgtgataattcattttcatatatatattc-tcaaccttgacactgaacag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075654|gb|DV504088.1|DV504088
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|40334416|gb|CK368486.1|CK368486
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|50336722|gb|CO531848.1|CO531848
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|71764065|gb|DR962002.1|DR962002
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|91878207|gb|EB408164.1|EB408164
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|76285904|gb|DV025472.1|DV025472
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|89759547|gb|DY688342.1|DY688342
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|30307231|gb|CD001904.1|CD001904
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|149080870|gb|EE169951.2|EE169951
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|93281461|gb|EB673725.1|EB673725
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|76021472|gb|DT948642.1|DT948642
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|27522138|gb|CA989244.1|CA989244
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGGA
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGGA
EST: gi|148976019|gb|EE025878.2|EE025878
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCC-ATGACGCGATTGATCGAATTGTGAGAG
EST: gi|50322460|gb|CO517586.1|CO517586
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|78105461|gb|DV523879.1|DV523879
EST:     CAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|50334433|gb|CO529559.1|CO529559
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|71774560|gb|DR972438.1|DR972438
EST:     CTCTTTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|91051589|gb|EB162007.1|EB162007
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|78085115|gb|DV513508.1|DV513508
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCC-ATGACGCGATTGATCGAATTGTGAGAG
EST: gi|78078210|gb|DV506625.1|DV506625
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|91878508|gb|EB408465.1|EB408465
EST:     CTCCATTCCCACTTGGAACTGGCTCAGATTTTGCTCCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTC-ATTCC-ACTTGGAACTGGCTCAGATTTTGCTC-GGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|78105462|gb|DV523880.1|DV523880
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|71436209|gb|DR817259.1|DR817259
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTG--AG--
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|67022745|gb|CO451494.1|CO451494
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|78121934|gb|DV540318.1|DV540318
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|78113487|gb|DV531878.1|DV531878
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|33467744|gb|CF244793.1|CF244793
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGGAGT
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGG-CTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGGAGT
EST: gi|211469689|gb|FK976086.1|FK976086
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|40335239|gb|CK369309.1|CK369309
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|78121935|gb|DV540319.1|DV540319
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|71298751|gb|DR785364.1|DR785364
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|31363680|gb|CD448037.1|CD448037
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCTATTGATCGAATTGTGAGAGGA
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGGA
EST: gi|8102673|gb|AW927320.1|AW927320
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|71436272|gb|DR817322.1|DR817322
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|32867365|gb|CF007047.1|CF007047
EST:     CTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|30087080|gb|CB885288.1|CB885288
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
EST: gi|31406361|gb|CD485093.1|CD485093
EST:     CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG                         GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgt ... tttttaccagGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG