1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggttatgtgcaatctgcattacatttagtttctggaatgattcatttcacgatagtataacatatgccattatcttttttcag
species | Zea mays |
transcript | GRMZM5G806309_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|18963864|gb|BM660673.1|BM660673
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|20301036|gb|BQ163979.1|BQ163979
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|5928962|gb|AW056254.1|AW056254
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|67015187|gb|CO443936.1|CO443936
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|76286234|gb|DV025802.1|DV025802
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|18964396|gb|BM660982.1|BM660982
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTCCAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|5804622|gb|AI979592.1|AI979592
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: GGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|18964395|gb|BM660981.1|BM660981
genomic: GGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|71765228|gb|DR963165.1|DR963165
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACEST: gi|5714180|gb|AI944165.1|AI944165
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTAC
EST: CACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|113695161|gb|DW849538.1|DW849538
genomic: CACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGGEST: gi|71765227|gb|DR963164.1|DR963164
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
EST: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTG CCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
genomic: CTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggtt ... cttttttcagCCTCTCCCTACTAAGCTAGTTTTGCAGAAGAAGAAGGCGAAGGAGGGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGATAAGGAGGAGGGTGCAAAATATTTGgtaattggttatgtgcaatctgcattacatttagtttctggaatgattcatttcacgatagtataacatatgccattatcttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG