1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATACACTAGCAAGGTGGATGATTTAGTGAAGGACAGAATTGAGTCACAGAATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaaatcttcattcacatgttctgttcgtgtaattaatcatttcatcctgaggcagttggcatgacaagttacgttccattttgcag
species | Zea mays |
transcript | GRMZM5G804382_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGAAGAAAGAGTCAAAGAGAAGGAGAAGAAAGATCTTGTGGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|32827950|gb|CD967628.1|CD967628
genomic: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: GATCTCGTGGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|211434575|gb|FL418939.1|FL418939
genomic: GATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|33093317|gb|CF053311.1|CF053311
genomic: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: ATGAAGAAAGAGTCAAAGAGAAGGAGAAGAAAGATCTTGTGGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|32945927|gb|CF050746.1|CF050746
genomic: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: ATGAAGAAAGAGTCAAAGAGAAGGAGAAGAAAGATCTTGTGGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|32794485|gb|CD946721.1|CD946721
genomic: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: GATCTTGTGGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|24934286|gb|CA452504.1|CA452504
genomic: GATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|60355880|gb|DN222853.1|DN222853
genomic: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|32826787|gb|CD966465.1|CD966465
genomic: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: GATCTCGTGGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|32846561|gb|CD986242.1|CD986242
genomic: GATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: ATGAAGAAAGAGTCAAAGAGAAGGAGAAGAAAGATCTTGTGGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|32846264|gb|CD985945.1|CD985945
genomic: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: ATGAAGAAAGAGTCAAAGAGAAGGAGAAGAAAGATCTTGTGGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCTEST: gi|32847239|gb|CD986920.1|CD986920
genomic: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
EST: ATGAAGAAAGAGTCAAAGAGAAGGAGAAGAAAGATCTTGTGGCTCAGCAG AACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
genomic: ATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaa ... cattttgcagAACATGTATGCGCAATTGCTTCCTCTTGCTTTGCCTGCTCCGCCAATGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACACTAGCAAGGTGGATGATTTAGTGAAGGACAGAATTGAGTCACAGAATGAAGAAAGAGTCAAAGAGAAGGAGGAGAAAGATCTTGTTGCTCAGCAGgtacatctaaatcttcattcacatgttctgttcgtgtaattaatcatttcatcctgaggcagttggcatgacaagttacgttccattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA