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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAGgtaagacatcctaaatgcttaaaatatgcgaggaatgatatattgtagtttttcagattcacatatgtcttctctacag

Basic information

species Zea mays
transcript GRMZM5G801369_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G801369_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g68260.1 (Oryza sativa), 5'ss of exon 5
GATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAGgtaa-------gacatcctaaatgcttaaaata--tgcgaggaatga-tatattgtagtttttcagattcacatatgtcttctctacag----------------------------------------------------------------------------------------------------
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GATCTTACTAGCCAGCCAAGATACCTTATTACCTTCACAGTTGGATACTCTCAAAAGGCAAATATTGATGCAGCAGTCAAAAAGgtaattacttagacaactagcatgtgtaaactgattgcattgaataagcatacaattgcttt----gttcaaaatagtcttcagaatagaaaaaaaaaacttatgttcaactataaggcatctatcatgcttaaacagttaactgagacatctatcattcacttcaaatttacatgccttattatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075694|gb|EE164238.2|EE164238
EST:     TTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAG                         TTTTCAGATAACTTCACAATTATGTTGTTCCATTATGATGGTCGGACAACT
genomic: TTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAGgtaagacatc ... ttctctacagTTTTCAGATAACTTCACAATTATGTTGTTCCATTATGATGGTCGGACAACT
EST: gi|71301944|gb|DR787048.1|DR787048
EST:     TTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAG                         TTTTCAGATAACTTCACAATTATGTTGTTCCATTATGATGGGCGGACAACT
genomic: TTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAGgtaagacatc ... ttctctacagTTTTCAGATAACTTCACAATTATGTTGTTCCATTATGATGGTCGGACAACT