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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCGTGATCAGGAAGGCATGCTTATTACCTTGGAGTTTGATGATTTTTACTTGGTCAATGCTTATGTCCCAAATTCTGGTCGTGGTTTACGTAGACTGgtaaaagttattcttccttcatgttgttagtgttcatattatgttgtactgcaattgcttaggatattgaattttgctctgttgcttcttggtcttcaga...

Basic information

species Zea mays
transcript GRMZM5G800154_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G800154_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g58690.1 (Oryza sativa), 5'ss of exon 4
AGAGCGTGATCAGGAAGGCATGCTTATTACCTTGGAGTTTGATGATTTTTACTTGGTCAATGCTTATGTCCCAAATTCTGGTCGTGGTTTACGTAGACTGgtaaaagttattcttccttc--atgttgttagtgttcatattatgttgtactgcaattgcttaggatattgaattttgctctgttgcttcttggtcttcaga
 || | |||||| || |||| | |||||||  |||||||||||| |||||||||||| ||||| ||||| |||||||||||||||  | ||||||||||||||| | |  || | || ||   | ||  |  || |  |||  | || || | ||||||||| |   ||  ||||||| | | |||| | ||| | ||||| 
TGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGgtaagactgcttttcccatctagtattactgttgctt-tatagtattttatttcaattgctttg---atctaattttgttttcttgcattttgattttcag-