Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAGAGTCAGCGTTGAAGGGCTCCCACTTCATTGAATTGTGCGCTCAGCGGCATATTCCTTTGATTTTCCTTCAAAACATTACTGGGTTCATGGTATGgtatttcatttactcttcaaattacttcttttgagctctttcctttcatatcccactatacacatagtagacagacctattattgtattgacatttttag

Basic information

species Zea mays
transcript GRMZM2G702490_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G702490_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g32850.2 (Oryza sativa), 5'ss of exon 5
-----TTACAGAGTCAGCGTTGAAGGGCTCCCACTTCATTGAATTGTGCGCTCAGCGGCATATTCCTTTGATTTTCCTTCAAAACATTACTGGGTTCATGGTATGgtatttcatttactcttcaaattacttcttttga-gctctttcctttcatatcccactatacacatagtagacagacctattattgtattgacatttttag
     ||||||| |||||  | ||||| ||||||||||| |||||||| || |||||  ||||||||||||| ||||||||||| |||||||| ||||||||||| ||| | ||||||| || ||||   |  |||  |  | | ||   | || |  |  ||          |         | ||| |  ||  | |       
TTTGTTTACAGAATCAGCCCTAAAGGGTTCCCACTTCATAGAATTGTGTGCCCAGCGCAATATTCCTTTGATATTCCTTCAAAATATTACTGGATTCATGgtatgttatgttatttacttttgaaatccttcatttcaatacacattttgtacacactcagctcagtgatctttgtgacatttttttactagat-aataga-----